Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7654 | 5' | -58.7 | NC_001973.1 | + | 145587 | 1.08 | 0.001981 |
Target: 5'- uGUACACGAGCGCGGCCGUGGACCUGAg -3' miRNA: 3'- -CAUGUGCUCGCGCCGGCACCUGGACU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 45829 | 0.84 | 0.092415 |
Target: 5'- uGUGCGCcGGCGCGGCguuCGUGGGCCUGGg -3' miRNA: 3'- -CAUGUGcUCGCGCCG---GCACCUGGACU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 76575 | 0.74 | 0.354435 |
Target: 5'- -aACGaauCGAGCGUGGCCGaggcggccaagcaguUGGGCCUGGc -3' miRNA: 3'- caUGU---GCUCGCGCCGGC---------------ACCUGGACU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 136436 | 0.72 | 0.478479 |
Target: 5'- cUGCGCGAGCGCaggGGCgCGUaGGGCCg-- -3' miRNA: 3'- cAUGUGCUCGCG---CCG-GCA-CCUGGacu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 53513 | 0.72 | 0.49712 |
Target: 5'- uGUACACGGcCGC-GCCGUcGGGCCUGu -3' miRNA: 3'- -CAUGUGCUcGCGcCGGCA-CCUGGACu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 150045 | 0.71 | 0.516081 |
Target: 5'- -gGC-CGGGCGCGGCCGaaggcUGGAaaUCUGGg -3' miRNA: 3'- caUGuGCUCGCGCCGGC-----ACCU--GGACU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 58773 | 0.7 | 0.574512 |
Target: 5'- aGUGC-CG-GCGC-GCCGUGGugaACCUGAg -3' miRNA: 3'- -CAUGuGCuCGCGcCGGCACC---UGGACU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 7929 | 0.7 | 0.584421 |
Target: 5'- -aGCGCGuguGCGCGGCCGgcgUGGugCa-- -3' miRNA: 3'- caUGUGCu--CGCGCCGGC---ACCugGacu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 95131 | 0.7 | 0.598347 |
Target: 5'- gGUGCACGAcccguGgGCGGCCGUgcagaagccgcaaaaGGGCgUGAc -3' miRNA: 3'- -CAUGUGCU-----CgCGCCGGCA---------------CCUGgACU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 95782 | 0.69 | 0.654326 |
Target: 5'- --gUACGGGCGCGGC--UGGACCg-- -3' miRNA: 3'- cauGUGCUCGCGCCGgcACCUGGacu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 110863 | 0.69 | 0.654326 |
Target: 5'- uGUACGCGuGC-CGGCgCGcGGACCUcGAc -3' miRNA: 3'- -CAUGUGCuCGcGCCG-GCaCCUGGA-CU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 53873 | 0.69 | 0.654326 |
Target: 5'- -cGC-CGAGCgcgGCGGCCGUGG-CCg-- -3' miRNA: 3'- caUGuGCUCG---CGCCGGCACCuGGacu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 36310 | 0.68 | 0.68418 |
Target: 5'- -aACACGGGCgccgcggccgacGCGGCCGacgcGGGCCUc- -3' miRNA: 3'- caUGUGCUCG------------CGCCGGCa---CCUGGAcu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 95828 | 0.68 | 0.68418 |
Target: 5'- cGUuCACGGGCGCGGCgacGGGCCcGGu -3' miRNA: 3'- -CAuGUGCUCGCGCCGgcaCCUGGaCU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 132539 | 0.68 | 0.713663 |
Target: 5'- -cGC-CGGGCGCGGCgGcGGGCUcGAg -3' miRNA: 3'- caUGuGCUCGCGCCGgCaCCUGGaCU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 51729 | 0.67 | 0.732999 |
Target: 5'- -cACACGcGCGagGGCaCGUGGGCCg-- -3' miRNA: 3'- caUGUGCuCGCg-CCG-GCACCUGGacu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 21546 | 0.67 | 0.770602 |
Target: 5'- -gGCGuCGGGCGC-GCCGUGGuCCcGGc -3' miRNA: 3'- caUGU-GCUCGCGcCGGCACCuGGaCU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 5982 | 0.67 | 0.779728 |
Target: 5'- uUGCACGcGGCGCGGUCGcguuucGACCgGAc -3' miRNA: 3'- cAUGUGC-UCGCGCCGGCac----CUGGaCU- -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 5946 | 0.67 | 0.779728 |
Target: 5'- aUGCGCGA-CGCGGCCGgcGGAugcgacguCCUGc -3' miRNA: 3'- cAUGUGCUcGCGCCGGCa-CCU--------GGACu -5' |
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7654 | 5' | -58.7 | NC_001973.1 | + | 72822 | 0.66 | 0.787835 |
Target: 5'- uGUugACGAGgccgGCGGCCGccgcgcaguccgaUGGACCg-- -3' miRNA: 3'- -CAugUGCUCg---CGCCGGC-------------ACCUGGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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