miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7655 3' -64.5 NC_001973.1 + 21272 0.66 0.568815
Target:  5'- cGAGCCgCGGCGU-----CCGCCGGGCc -3'
miRNA:   3'- cUUCGG-GCCGCGcccguGGCGGCUCG- -5'
7655 3' -64.5 NC_001973.1 + 10084 0.66 0.568815
Target:  5'- uGAA-CCCGGUGaGGGgAUCGaUCGAGCa -3'
miRNA:   3'- -CUUcGGGCCGCgCCCgUGGC-GGCUCG- -5'
7655 3' -64.5 NC_001973.1 + 30391 0.66 0.565014
Target:  5'- -cGGgCCGGCGCGgcggcggcggcggaGGCGCCgcgaacuGCCGAcgGCa -3'
miRNA:   3'- cuUCgGGCCGCGC--------------CCGUGG-------CGGCU--CG- -5'
7655 3' -64.5 NC_001973.1 + 44444 0.66 0.559326
Target:  5'- gGgcGCUCgGGCGCGGGCGCU--CGGGg -3'
miRNA:   3'- -CuuCGGG-CCGCGCCCGUGGcgGCUCg -5'
7655 3' -64.5 NC_001973.1 + 102812 0.66 0.559326
Target:  5'- cAAGgCCGGCGUcauGGcGCGCCGCaaCGAcaGCa -3'
miRNA:   3'- cUUCgGGCCGCG---CC-CGUGGCG--GCU--CG- -5'
7655 3' -64.5 NC_001973.1 + 106970 0.66 0.559326
Target:  5'- --cGCUCGGCGUGcGcGCGCUGCaGAGg -3'
miRNA:   3'- cuuCGGGCCGCGC-C-CGUGGCGgCUCg -5'
7655 3' -64.5 NC_001973.1 + 52186 0.66 0.559326
Target:  5'- cGAGCgCGGCG-GGGuCGCgCGaCuCGAGCa -3'
miRNA:   3'- cUUCGgGCCGCgCCC-GUG-GC-G-GCUCG- -5'
7655 3' -64.5 NC_001973.1 + 53498 0.66 0.558379
Target:  5'- gGAAGCggUCGGUGUuguacacGGccGCGCCGUCGGGCc -3'
miRNA:   3'- -CUUCG--GGCCGCG-------CC--CGUGGCGGCUCG- -5'
7655 3' -64.5 NC_001973.1 + 45662 0.66 0.553654
Target:  5'- -cGGCCugcgcgucucggauuCGcGCGUGGGCGCCGUgcAGCg -3'
miRNA:   3'- cuUCGG---------------GC-CGCGCCCGUGGCGgcUCG- -5'
7655 3' -64.5 NC_001973.1 + 21562 0.66 0.549882
Target:  5'- -uGGuCCCGGCGCGcGGgguugaagugcuCGCCGgCCGAcguGCa -3'
miRNA:   3'- cuUC-GGGCCGCGC-CC------------GUGGC-GGCU---CG- -5'
7655 3' -64.5 NC_001973.1 + 28943 0.66 0.549882
Target:  5'- -cGGCUggggCGGCaGCGGGgGCCggcaGUCGGGCg -3'
miRNA:   3'- cuUCGG----GCCG-CGCCCgUGG----CGGCUCG- -5'
7655 3' -64.5 NC_001973.1 + 123231 0.66 0.549882
Target:  5'- --cGUCCGGCuCGGcGUcCCGCCGuuGCg -3'
miRNA:   3'- cuuCGGGCCGcGCC-CGuGGCGGCu-CG- -5'
7655 3' -64.5 NC_001973.1 + 69928 0.66 0.549882
Target:  5'- --cGCCgCGGCGCGuGaGCAggcccCUGCCGcGCa -3'
miRNA:   3'- cuuCGG-GCCGCGC-C-CGU-----GGCGGCuCG- -5'
7655 3' -64.5 NC_001973.1 + 87114 0.66 0.549882
Target:  5'- --uGCgCGuGCGCGGcguGCGCgCGCCGGuGCg -3'
miRNA:   3'- cuuCGgGC-CGCGCC---CGUG-GCGGCU-CG- -5'
7655 3' -64.5 NC_001973.1 + 115083 0.66 0.549882
Target:  5'- -cGGCCuCGGCGUccgccGaGGCGCgaugucugaGCCGGGCg -3'
miRNA:   3'- cuUCGG-GCCGCG-----C-CCGUGg--------CGGCUCG- -5'
7655 3' -64.5 NC_001973.1 + 132539 0.66 0.549882
Target:  5'- --cGCCgGGCGC-GGCGgCGggcUCGAGCg -3'
miRNA:   3'- cuuCGGgCCGCGcCCGUgGC---GGCUCG- -5'
7655 3' -64.5 NC_001973.1 + 10702 0.66 0.54894
Target:  5'- cGAuCUCGGCGgGcggcucgaugagcGGCACCGUCGAGUu -3'
miRNA:   3'- cUUcGGGCCGCgC-------------CCGUGGCGGCUCG- -5'
7655 3' -64.5 NC_001973.1 + 146081 0.66 0.544239
Target:  5'- -cGGCUCGG-GCGGGCggggacuaaggucggGCCGCggcgcUGAGCc -3'
miRNA:   3'- cuUCGGGCCgCGCCCG---------------UGGCG-----GCUCG- -5'
7655 3' -64.5 NC_001973.1 + 83871 0.66 0.540488
Target:  5'- --cGCCCGcGCGCGGcGCGa-GCUcaggGAGCa -3'
miRNA:   3'- cuuCGGGC-CGCGCC-CGUggCGG----CUCG- -5'
7655 3' -64.5 NC_001973.1 + 62576 0.66 0.540488
Target:  5'- aGGGCUCGa-GCGGGCGCagcgacgcguCGCuCGAGCg -3'
miRNA:   3'- cUUCGGGCcgCGCCCGUG----------GCG-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.