miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7655 5' -50.6 NC_001973.1 + 157731 0.66 0.995872
Target:  5'- -gACgaggugGAGCGcgGUGCGCgc-GCUGCa -3'
miRNA:   3'- gaUGaa----CUUGCa-CACGCGguuCGACG- -5'
7655 5' -50.6 NC_001973.1 + 22074 0.66 0.995872
Target:  5'- -gGCgUGuGCGgaGUGCGCCGAGUuuUGUa -3'
miRNA:   3'- gaUGaACuUGCa-CACGCGGUUCG--ACG- -5'
7655 5' -50.6 NC_001973.1 + 118023 0.66 0.995171
Target:  5'- -aGCgcguACGUGUaccggGCGCCGuucguGCUGCa -3'
miRNA:   3'- gaUGaacuUGCACA-----CGCGGUu----CGACG- -5'
7655 5' -50.6 NC_001973.1 + 95703 0.66 0.995171
Target:  5'- cCUACaccgccGACGgcgcgGUGCGCC-GGCUGUu -3'
miRNA:   3'- -GAUGaac---UUGCa----CACGCGGuUCGACG- -5'
7655 5' -50.6 NC_001973.1 + 37029 0.66 0.995171
Target:  5'- -aACUUGGACaauaUGaCGCCGcgcgAGCUGCg -3'
miRNA:   3'- gaUGAACUUGcac-AC-GCGGU----UCGACG- -5'
7655 5' -50.6 NC_001973.1 + 28655 0.66 0.992475
Target:  5'- gCUGCgcGAGCGcG-GCGUCGAGC-GCg -3'
miRNA:   3'- -GAUGaaCUUGCaCaCGCGGUUCGaCG- -5'
7655 5' -50.6 NC_001973.1 + 59700 0.66 0.991348
Target:  5'- aUGCagaUGGACGUuugguUGCGCCuguuucGGCUGCu -3'
miRNA:   3'- gAUGa--ACUUGCAc----ACGCGGu-----UCGACG- -5'
7655 5' -50.6 NC_001973.1 + 61630 0.66 0.991348
Target:  5'- -----cGAACGUGUuuauuucgucGCGCC--GCUGCg -3'
miRNA:   3'- gaugaaCUUGCACA----------CGCGGuuCGACG- -5'
7655 5' -50.6 NC_001973.1 + 29833 0.66 0.991348
Target:  5'- -gAUUUGAACGUGUcgagcaucGCGUCGuuGCUGa -3'
miRNA:   3'- gaUGAACUUGCACA--------CGCGGUu-CGACg -5'
7655 5' -50.6 NC_001973.1 + 48719 0.67 0.988697
Target:  5'- -cGCUcGAGuCGUGcuUGCGCC--GCUGCu -3'
miRNA:   3'- gaUGAaCUU-GCAC--ACGCGGuuCGACG- -5'
7655 5' -50.6 NC_001973.1 + 31358 0.67 0.988697
Target:  5'- uCUGCgUGGucgccgcgGCgGUGUGCGCCA-GCgacgGCa -3'
miRNA:   3'- -GAUGaACU--------UG-CACACGCGGUuCGa---CG- -5'
7655 5' -50.6 NC_001973.1 + 37895 0.67 0.987154
Target:  5'- -cACUUGGA-Gg--GCGCCGGGCgcgGCa -3'
miRNA:   3'- gaUGAACUUgCacaCGCGGUUCGa--CG- -5'
7655 5' -50.6 NC_001973.1 + 59068 0.67 0.985455
Target:  5'- gUGCgc-AACGUGUGcCGCUucguGCUGCc -3'
miRNA:   3'- gAUGaacUUGCACAC-GCGGuu--CGACG- -5'
7655 5' -50.6 NC_001973.1 + 111448 0.67 0.985455
Target:  5'- -----aGAuCGUGUGCGCCAaaaccgagaGGCcGCg -3'
miRNA:   3'- gaugaaCUuGCACACGCGGU---------UCGaCG- -5'
7655 5' -50.6 NC_001973.1 + 56505 0.67 0.983588
Target:  5'- -aGCUcGGGCGgggcgGgcucgGCGCCAAGCUcggGCg -3'
miRNA:   3'- gaUGAaCUUGCa----Ca----CGCGGUUCGA---CG- -5'
7655 5' -50.6 NC_001973.1 + 56451 0.67 0.983588
Target:  5'- -aGCUcGGGCGgggcgGgcucgGCGCCAAGCUcggGCg -3'
miRNA:   3'- gaUGAaCUUGCa----Ca----CGCGGUUCGA---CG- -5'
7655 5' -50.6 NC_001973.1 + 58793 0.68 0.976897
Target:  5'- -aACcUGAGCGUGcGCGagcugGAGCUGCu -3'
miRNA:   3'- gaUGaACUUGCACaCGCgg---UUCGACG- -5'
7655 5' -50.6 NC_001973.1 + 146375 0.68 0.976897
Target:  5'- -cACaUGAGCGUGUGC-CC-GGCggGCa -3'
miRNA:   3'- gaUGaACUUGCACACGcGGuUCGa-CG- -5'
7655 5' -50.6 NC_001973.1 + 139878 0.68 0.972601
Target:  5'- -cACUUGAucggcaagcucgagcGCGUG-GUGUCGGuGCUGCg -3'
miRNA:   3'- gaUGAACU---------------UGCACaCGCGGUU-CGACG- -5'
7655 5' -50.6 NC_001973.1 + 87125 0.68 0.971442
Target:  5'- -gGCgUGcGCGcgccgGUGCGCCGccuGCUGCa -3'
miRNA:   3'- gaUGaACuUGCa----CACGCGGUu--CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.