miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 30366 0.74 0.174877
Target:  5'- gGCcgCCGGCgcGGCGaCUCGGGUGCgggccGGCGCg -3'
miRNA:   3'- -CGa-GGCCG--CCGC-GGGCUCACG-----CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 30796 0.74 0.187613
Target:  5'- -aUgUGGCGGuCGCCCGAGggguugGUGGCGUc -3'
miRNA:   3'- cgAgGCCGCC-GCGGGCUCa-----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 32054 0.71 0.290835
Target:  5'- cGCguugCCGGCGGUGCgCUGccagcccagcgagaaGGUG-GGCGCg -3'
miRNA:   3'- -CGa---GGCCGCCGCG-GGC---------------UCACgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35032 0.71 0.307636
Target:  5'- cCUCCucGCGGCcUUCGAG-GCGGCGCa -3'
miRNA:   3'- cGAGGc-CGCCGcGGGCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35427 0.68 0.435258
Target:  5'- cGCUCgacgcgcaaCGcGCGGuCGUCgaCGAGgcgGCGGCGCa -3'
miRNA:   3'- -CGAG---------GC-CGCC-GCGG--GCUCa--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35664 0.67 0.487064
Target:  5'- cGCUgcaccaCGGC-GCGgCCGAcgGCGGCGCg -3'
miRNA:   3'- -CGAg-----GCCGcCGCgGGCUcaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 37774 0.67 0.51404
Target:  5'- -aUCgGGgGGCGCCgccGcGCGGCGCu -3'
miRNA:   3'- cgAGgCCgCCGCGGgcuCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 38959 0.67 0.468586
Target:  5'- cGCgaagaggCCGGCGaGCGUuuauaaaCCGAcgGCGGUGCg -3'
miRNA:   3'- -CGa------GGCCGC-CGCG-------GGCUcaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 39251 0.67 0.487064
Target:  5'- cGCUuuGGUuuugagGGCGUcgCCGuc-GCGGCGCa -3'
miRNA:   3'- -CGAggCCG------CCGCG--GGCucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 39396 0.68 0.452181
Target:  5'- uGCUCgaCGGCGcGCGCcaggucggCCGcGGUGaGGCGCg -3'
miRNA:   3'- -CGAG--GCCGC-CGCG--------GGC-UCACgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 39962 0.67 0.504978
Target:  5'- aGCcCCGGC-GCcUCCGGGccgaaGCGGCGCu -3'
miRNA:   3'- -CGaGGCCGcCGcGGGCUCa----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 40281 0.67 0.469458
Target:  5'- cGCUCUucaGGUGGCGUugaaagggcuCCGAGUGaaucuGGCGg -3'
miRNA:   3'- -CGAGG---CCGCCGCG----------GGCUCACg----CCGCg -5'
7656 3' -64.9 NC_001973.1 + 41792 0.66 0.523169
Target:  5'- ---aCGGCGG-GCgCGAGUG-GGUGCu -3'
miRNA:   3'- cgagGCCGCCgCGgGCUCACgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 42023 0.67 0.51404
Target:  5'- --aCCGGCGaGCGUcgaccuggCCGAG-GUGaGCGCg -3'
miRNA:   3'- cgaGGCCGC-CGCG--------GGCUCaCGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 42582 0.7 0.341289
Target:  5'- cGUggCUGaCGGUGCUCGccaaggaGGUGCGGCGCg -3'
miRNA:   3'- -CGa-GGCcGCCGCGGGC-------UCACGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 42873 0.68 0.426935
Target:  5'- aGCgagCGGCGGCGCgUGAucUGCaGCGCg -3'
miRNA:   3'- -CGag-GCCGCCGCGgGCUc-ACGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 44447 0.7 0.314293
Target:  5'- cGCUCgGGCgcgGGCGCUCGGGgaucGaacgGGCGCu -3'
miRNA:   3'- -CGAGgCCG---CCGCGGGCUCa---Cg---CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 45613 0.66 0.569646
Target:  5'- aGCgcgUCGGCGaucagguccacGCGCUcguCGAGcGCGGCGUc -3'
miRNA:   3'- -CGa--GGCCGC-----------CGCGG---GCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 45799 0.68 0.435258
Target:  5'- uGCUCgaGGCGGCGUUgGGagucaaucuaguGUGCgccGGCGCg -3'
miRNA:   3'- -CGAGg-CCGCCGCGGgCU------------CACG---CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 45858 0.66 0.541606
Target:  5'- gGCgucgCgGGCGcGCGCuCCucGgccGCGGCGCu -3'
miRNA:   3'- -CGa---GgCCGC-CGCG-GGcuCa--CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.