miRNA display CGI


Results 41 - 60 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 46002 0.66 0.532359
Target:  5'- cGCgaugCCGGCGcgcgaGCGCCUGucugGCcaugGGCGCg -3'
miRNA:   3'- -CGa---GGCCGC-----CGCGGGCuca-CG----CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 46378 0.7 0.3492
Target:  5'- ---aCGGUGGUuCCUGAGggauuUGCGGCGCg -3'
miRNA:   3'- cgagGCCGCCGcGGGCUC-----ACGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 50090 0.78 0.105501
Target:  5'- ---gCGGCGGCGCCacgGAGggcgGCGGCGCc -3'
miRNA:   3'- cgagGCCGCCGCGGg--CUCa---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 51814 0.71 0.294648
Target:  5'- uGCUgCGcGaGGCGCCCGcGUGCguGGUGCg -3'
miRNA:   3'- -CGAgGC-CgCCGCGGGCuCACG--CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 52158 0.69 0.371433
Target:  5'- gGCagCCGGUGGgCGCCguacuuggcgaCGAGcGCGGCGg -3'
miRNA:   3'- -CGa-GGCCGCC-GCGG-----------GCUCaCGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 53859 0.78 0.102944
Target:  5'- gGCggCGGCGGCGCcgCCGAGcGCGGCGg -3'
miRNA:   3'- -CGagGCCGCCGCG--GGCUCaCGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 55431 0.7 0.321058
Target:  5'- gGCggCGGCGG-GCCCGA---CGGCGCg -3'
miRNA:   3'- -CGagGCCGCCgCGGGCUcacGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 56343 0.71 0.28209
Target:  5'- cGCUCgCGGCcGCGCUCGGGccccgacuCGGCGCc -3'
miRNA:   3'- -CGAG-GCCGcCGCGGGCUCac------GCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 58042 0.69 0.356505
Target:  5'- gGCUCCGGCGGCGgCg----GCGGCu- -3'
miRNA:   3'- -CGAGGCCGCCGCgGgcucaCGCCGcg -5'
7656 3' -64.9 NC_001973.1 + 58740 0.72 0.251996
Target:  5'- uGCagCGGCGcgccgucGCGCCCcucguggaaGAGUGcCGGCGCg -3'
miRNA:   3'- -CGagGCCGC-------CGCGGG---------CUCAC-GCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 59871 0.67 0.478221
Target:  5'- cCUCCGacgcgcGCGGC-CCCaacgGCGGCGCg -3'
miRNA:   3'- cGAGGC------CGCCGcGGGcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 61101 0.66 0.532359
Target:  5'- cGCggCCGacggagcaGCGGCGgCgGGGcGCGGCGUc -3'
miRNA:   3'- -CGa-GGC--------CGCCGCgGgCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 63610 0.66 0.540679
Target:  5'- cGCUCaCGGaCGcGCGCacggccaaaucggCCGcGUgggGCGGCGCg -3'
miRNA:   3'- -CGAG-GCC-GC-CGCG-------------GGCuCA---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 64022 0.68 0.443675
Target:  5'- uCUCUGaccuGCGGCGCCCGGaaGCuguucgucaacgGGCGCa -3'
miRNA:   3'- cGAGGC----CGCCGCGGGCUcaCG------------CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 64871 0.72 0.252559
Target:  5'- cCUgCgGGCucGCGCCCGaAGUGCuGGCGCg -3'
miRNA:   3'- cGA-GgCCGc-CGCGGGC-UCACG-CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 67619 0.66 0.532359
Target:  5'- aGCUggugCCGGCcGCGUCCGAGaGC-GUGCc -3'
miRNA:   3'- -CGA----GGCCGcCGCGGGCUCaCGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 71752 0.69 0.36317
Target:  5'- cGCcCCGGCcgcgccgGGCcccgccgccgaGCUCGAGgccgGCGGCGCc -3'
miRNA:   3'- -CGaGGCCG-------CCG-----------CGGGCUCa---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 74351 0.7 0.314293
Target:  5'- --gCCGGCGGCGCa-----GCGGCGCa -3'
miRNA:   3'- cgaGGCCGCCGCGggcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 74782 0.7 0.321058
Target:  5'- aCUUgGuGCGGuCGCCgGGGUG-GGCGCg -3'
miRNA:   3'- cGAGgC-CGCC-GCGGgCUCACgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 76476 0.66 0.569646
Target:  5'- gGCU-CGGCGGUGCCCGAcaacGUGUuccaGCc -3'
miRNA:   3'- -CGAgGCCGCCGCGGGCU----CACGccg-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.