miRNA display CGI


Results 61 - 80 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 76986 0.67 0.493301
Target:  5'- uGUUCa-GCGGCGCCaCGcugaucaccucgucGGgcggcgGCGGCGCg -3'
miRNA:   3'- -CGAGgcCGCCGCGG-GC--------------UCa-----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 77294 0.66 0.569646
Target:  5'- cCUCCGcCGcCG-CCGAGacggGCGGCGCg -3'
miRNA:   3'- cGAGGCcGCcGCgGGCUCa---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 83078 0.67 0.469458
Target:  5'- cCUCCGGCGaGCGgCg----GCGGCGCc -3'
miRNA:   3'- cGAGGCCGC-CGCgGgcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 86617 0.68 0.442829
Target:  5'- --aCCGGCgacaagaGGCGCUaCGAGUGCGccuacuGCGCc -3'
miRNA:   3'- cgaGGCCG-------CCGCGG-GCUCACGC------CGCG- -5'
7656 3' -64.9 NC_001973.1 + 90306 0.66 0.523169
Target:  5'- cGCacagUCGGuCGGCGggCGAG-GCGGUGCg -3'
miRNA:   3'- -CGa---GGCC-GCCGCggGCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 94268 0.73 0.210654
Target:  5'- aCUUCGGCacguacaacgaGGCG-CCGAGggaagGCGGCGCg -3'
miRNA:   3'- cGAGGCCG-----------CCGCgGGCUCa----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 94407 0.69 0.379056
Target:  5'- gGCcCgCGGCGcCGCCCGGaccgGCGGCGUu -3'
miRNA:   3'- -CGaG-GCCGCcGCGGGCUca--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 96585 0.67 0.495984
Target:  5'- gGUggCGGCGGCGCUggCGAcgacgGCGGaCGCg -3'
miRNA:   3'- -CGagGCCGCCGCGG--GCUca---CGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 96752 0.67 0.495984
Target:  5'- --aCCGGa-GCGCCggCGAGUcggGCGGCGUg -3'
miRNA:   3'- cgaGGCCgcCGCGG--GCUCA---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 101191 0.67 0.477341
Target:  5'- cGCgCCGGgcgaaauUGGCGCgCG-G-GCGGCGCu -3'
miRNA:   3'- -CGaGGCC-------GCCGCGgGCuCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 103903 0.71 0.306318
Target:  5'- aGCgagCCGccGCGGCGCgaCGAGgagcgcgucgucGCGGCGCg -3'
miRNA:   3'- -CGa--GGC--CGCCGCGg-GCUCa-----------CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 106410 0.84 0.038734
Target:  5'- uGCUUCGuGCGGCGCgacgCCGAGcGCGGCGCa -3'
miRNA:   3'- -CGAGGC-CGCCGCG----GGCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 106957 0.71 0.28209
Target:  5'- aGCgcgCCGG-GcGCGCUCGGcGUGCGcGCGCu -3'
miRNA:   3'- -CGa--GGCCgC-CGCGGGCU-CACGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 109355 0.67 0.51404
Target:  5'- aGCUCCGcucggccguaGCGgucgacgaGCGCCuCGuAGgcGCGGCGCa -3'
miRNA:   3'- -CGAGGC----------CGC--------CGCGG-GC-UCa-CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 109843 0.73 0.215545
Target:  5'- cGCUUCcGCGGCGUCgccgccgccgaCGAGgacGCGGCGCg -3'
miRNA:   3'- -CGAGGcCGCCGCGG-----------GCUCa--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 110785 0.68 0.443675
Target:  5'- uGCUCCGGCGGCacgGCgacgacgacgaCGAG-GCcGCGCc -3'
miRNA:   3'- -CGAGGCCGCCG---CGg----------GCUCaCGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 111067 0.75 0.155358
Target:  5'- uGCUCaacGCGGCGCCCGAcGUG-GGcCGCg -3'
miRNA:   3'- -CGAGgc-CGCCGCGGGCU-CACgCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 115079 0.68 0.435258
Target:  5'- aUUCCGGCcucGGCGUCCGccga-GGCGCg -3'
miRNA:   3'- cGAGGCCG---CCGCGGGCucacgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 118120 0.67 0.469458
Target:  5'- cGCUCaagcaGGUGGCGCgCGAGcccaauacguuuUGCGugaagcugcaGCGCg -3'
miRNA:   3'- -CGAGg----CCGCCGCGgGCUC------------ACGC----------CGCG- -5'
7656 3' -64.9 NC_001973.1 + 120574 0.73 0.220534
Target:  5'- -gUCgGGCgugcuaucacgGGCGCgCCGAGUcGCGGUGCg -3'
miRNA:   3'- cgAGgCCG-----------CCGCG-GGCUCA-CGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.