miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 121310 0.69 0.369167
Target:  5'- cGCgcgCCGGCGGaCGCgCCGAcgagcucaccgacagGCGGuCGCg -3'
miRNA:   3'- -CGa--GGCCGCC-GCG-GGCUca-------------CGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 121702 0.7 0.330711
Target:  5'- aGCUCggCGGCGGCGUcgucguccucgucguCCcaacGGUGCGGCGg -3'
miRNA:   3'- -CGAG--GCCGCCGCG---------------GGc---UCACGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 122542 0.67 0.478221
Target:  5'- aGCggCGGCGGCGCUgGuGgugGUGGUGg -3'
miRNA:   3'- -CGagGCCGCCGCGGgCuCa--CGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 122614 0.72 0.264055
Target:  5'- gGCgUCGGCGGCGCCgacgCGGGcGCcGGCGUc -3'
miRNA:   3'- -CGaGGCCGCCGCGG----GCUCaCG-CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 132544 0.73 0.205859
Target:  5'- gGCg-CGGCGGCggGCUCGAGcGCGGCGg -3'
miRNA:   3'- -CGagGCCGCCG--CGGGCUCaCGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 133295 0.71 0.28209
Target:  5'- cGCggCCGGCGGCgGCgCCGucGcGCGGCGa -3'
miRNA:   3'- -CGa-GGCCGCCG-CG-GGCu-CaCGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 133363 0.66 0.541606
Target:  5'- cGCUCuCGGCcGUGUagaCGAGUuuGGUGCg -3'
miRNA:   3'- -CGAG-GCCGcCGCGg--GCUCAcgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 136483 0.66 0.560254
Target:  5'- --gCCGGCGGCGUggCCGAcGcUGUGGUacacGCg -3'
miRNA:   3'- cgaGGCCGCCGCG--GGCU-C-ACGCCG----CG- -5'
7656 3' -64.9 NC_001973.1 + 137189 0.66 0.560254
Target:  5'- cGCUCagccacucGCGGCGCgagUCGcGcgGCGGCGCg -3'
miRNA:   3'- -CGAGgc------CGCCGCG---GGCuCa-CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 137272 0.66 0.532359
Target:  5'- uGCggCGGCGGgGCUCGGccGCGcGCGUu -3'
miRNA:   3'- -CGagGCCGCCgCGGGCUcaCGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 137887 0.67 0.495984
Target:  5'- cGCgUCGGCGaG-GCCCGAGUGCaccuuGGUGa -3'
miRNA:   3'- -CGaGGCCGC-CgCGGGCUCACG-----CCGCg -5'
7656 3' -64.9 NC_001973.1 + 144739 0.77 0.119205
Target:  5'- gGCggCGGCggaGGCGgCCGAGgagGCGGCGCg -3'
miRNA:   3'- -CGagGCCG---CCGCgGGCUCa--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 145015 1.12 0.000343
Target:  5'- gGCUCCGGCGGCGCCCGAGUGCGGCGCg -3'
miRNA:   3'- -CGAGGCCGCCGCGGGCUCACGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 146082 0.69 0.371433
Target:  5'- gGCUCgGGCGG-GCggggacuaaggUCGGGccGCGGCGCu -3'
miRNA:   3'- -CGAGgCCGCCgCG-----------GGCUCa-CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 152390 0.72 0.258255
Target:  5'- gGCgCgGGCGG-GCgCGGG-GCGGCGCg -3'
miRNA:   3'- -CGaGgCCGCCgCGgGCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 158633 0.68 0.443675
Target:  5'- cGC-CCGGC-GCGCCCGAcgacccGUuCGGCGa -3'
miRNA:   3'- -CGaGGCCGcCGCGGGCU------CAcGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 158677 0.67 0.469458
Target:  5'- -gUCCGGCgaagccGGCGgCCGAGcGC-GCGCc -3'
miRNA:   3'- cgAGGCCG------CCGCgGGCUCaCGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.