Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7656 | 3' | -64.9 | NC_001973.1 | + | 111067 | 0.75 | 0.155358 |
Target: 5'- uGCUCaacGCGGCGCCCGAcGUG-GGcCGCg -3' miRNA: 3'- -CGAGgc-CGCCGCGGGCU-CACgCC-GCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 110785 | 0.68 | 0.443675 |
Target: 5'- uGCUCCGGCGGCacgGCgacgacgacgaCGAG-GCcGCGCc -3' miRNA: 3'- -CGAGGCCGCCG---CGg----------GCUCaCGcCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 109843 | 0.73 | 0.215545 |
Target: 5'- cGCUUCcGCGGCGUCgccgccgccgaCGAGgacGCGGCGCg -3' miRNA: 3'- -CGAGGcCGCCGCGG-----------GCUCa--CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 109355 | 0.67 | 0.51404 |
Target: 5'- aGCUCCGcucggccguaGCGgucgacgaGCGCCuCGuAGgcGCGGCGCa -3' miRNA: 3'- -CGAGGC----------CGC--------CGCGG-GC-UCa-CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 106957 | 0.71 | 0.28209 |
Target: 5'- aGCgcgCCGG-GcGCGCUCGGcGUGCGcGCGCu -3' miRNA: 3'- -CGa--GGCCgC-CGCGGGCU-CACGC-CGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 106410 | 0.84 | 0.038734 |
Target: 5'- uGCUUCGuGCGGCGCgacgCCGAGcGCGGCGCa -3' miRNA: 3'- -CGAGGC-CGCCGCG----GGCUCaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 103903 | 0.71 | 0.306318 |
Target: 5'- aGCgagCCGccGCGGCGCgaCGAGgagcgcgucgucGCGGCGCg -3' miRNA: 3'- -CGa--GGC--CGCCGCGg-GCUCa-----------CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 101191 | 0.67 | 0.477341 |
Target: 5'- cGCgCCGGgcgaaauUGGCGCgCG-G-GCGGCGCu -3' miRNA: 3'- -CGaGGCC-------GCCGCGgGCuCaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 96752 | 0.67 | 0.495984 |
Target: 5'- --aCCGGa-GCGCCggCGAGUcggGCGGCGUg -3' miRNA: 3'- cgaGGCCgcCGCGG--GCUCA---CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 96585 | 0.67 | 0.495984 |
Target: 5'- gGUggCGGCGGCGCUggCGAcgacgGCGGaCGCg -3' miRNA: 3'- -CGagGCCGCCGCGG--GCUca---CGCC-GCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 94407 | 0.69 | 0.379056 |
Target: 5'- gGCcCgCGGCGcCGCCCGGaccgGCGGCGUu -3' miRNA: 3'- -CGaG-GCCGCcGCGGGCUca--CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 94268 | 0.73 | 0.210654 |
Target: 5'- aCUUCGGCacguacaacgaGGCG-CCGAGggaagGCGGCGCg -3' miRNA: 3'- cGAGGCCG-----------CCGCgGGCUCa----CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 90306 | 0.66 | 0.523169 |
Target: 5'- cGCacagUCGGuCGGCGggCGAG-GCGGUGCg -3' miRNA: 3'- -CGa---GGCC-GCCGCggGCUCaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 86617 | 0.68 | 0.442829 |
Target: 5'- --aCCGGCgacaagaGGCGCUaCGAGUGCGccuacuGCGCc -3' miRNA: 3'- cgaGGCCG-------CCGCGG-GCUCACGC------CGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 83078 | 0.67 | 0.469458 |
Target: 5'- cCUCCGGCGaGCGgCg----GCGGCGCc -3' miRNA: 3'- cGAGGCCGC-CGCgGgcucaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 77294 | 0.66 | 0.569646 |
Target: 5'- cCUCCGcCGcCG-CCGAGacggGCGGCGCg -3' miRNA: 3'- cGAGGCcGCcGCgGGCUCa---CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 76986 | 0.67 | 0.493301 |
Target: 5'- uGUUCa-GCGGCGCCaCGcugaucaccucgucGGgcggcgGCGGCGCg -3' miRNA: 3'- -CGAGgcCGCCGCGG-GC--------------UCa-----CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 76476 | 0.66 | 0.569646 |
Target: 5'- gGCU-CGGCGGUGCCCGAcaacGUGUuccaGCc -3' miRNA: 3'- -CGAgGCCGCCGCGGGCU----CACGccg-CG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 74782 | 0.7 | 0.321058 |
Target: 5'- aCUUgGuGCGGuCGCCgGGGUG-GGCGCg -3' miRNA: 3'- cGAGgC-CGCC-GCGGgCUCACgCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 74351 | 0.7 | 0.314293 |
Target: 5'- --gCCGGCGGCGCa-----GCGGCGCa -3' miRNA: 3'- cgaGGCCGCCGCGggcucaCGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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