miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 136483 0.66 0.560254
Target:  5'- --gCCGGCGGCGUggCCGAcGcUGUGGUacacGCg -3'
miRNA:   3'- cgaGGCCGCCGCG--GGCU-C-ACGCCG----CG- -5'
7656 3' -64.9 NC_001973.1 + 4020 0.66 0.560254
Target:  5'- cGCgCUGaGCGcGCGCUCGAacGUGUacacggGGCGCa -3'
miRNA:   3'- -CGaGGC-CGC-CGCGGGCU--CACG------CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 137189 0.66 0.560254
Target:  5'- cGCUCagccacucGCGGCGCgagUCGcGcgGCGGCGCg -3'
miRNA:   3'- -CGAGgc------CGCCGCG---GGCuCa-CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 45613 0.66 0.569646
Target:  5'- aGCgcgUCGGCGaucagguccacGCGCUcguCGAGcGCGGCGUc -3'
miRNA:   3'- -CGa--GGCCGC-----------CGCGG---GCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 76476 0.66 0.569646
Target:  5'- gGCU-CGGCGGUGCCCGAcaacGUGUuccaGCc -3'
miRNA:   3'- -CGAgGCCGCCGCGGGCU----CACGccg-CG- -5'
7656 3' -64.9 NC_001973.1 + 137272 0.66 0.532359
Target:  5'- uGCggCGGCGGgGCUCGGccGCGcGCGUu -3'
miRNA:   3'- -CGagGCCGCCgCGGGCUcaCGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 90306 0.66 0.523169
Target:  5'- cGCacagUCGGuCGGCGggCGAG-GCGGUGCg -3'
miRNA:   3'- -CGa---GGCC-GCCGCggGCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35664 0.67 0.487064
Target:  5'- cGCUgcaccaCGGC-GCGgCCGAcgGCGGCGCg -3'
miRNA:   3'- -CGAg-----GCCGcCGCgGGCUcaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 39251 0.67 0.487064
Target:  5'- cGCUuuGGUuuugagGGCGUcgCCGuc-GCGGCGCa -3'
miRNA:   3'- -CGAggCCG------CCGCG--GGCucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 76986 0.67 0.493301
Target:  5'- uGUUCa-GCGGCGCCaCGcugaucaccucgucGGgcggcgGCGGCGCg -3'
miRNA:   3'- -CGAGgcCGCCGCGG-GC--------------UCa-----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 96585 0.67 0.495984
Target:  5'- gGUggCGGCGGCGCUggCGAcgacgGCGGaCGCg -3'
miRNA:   3'- -CGagGCCGCCGCGG--GCUca---CGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 96752 0.67 0.495984
Target:  5'- --aCCGGa-GCGCCggCGAGUcggGCGGCGUg -3'
miRNA:   3'- cgaGGCCgcCGCGG--GCUCA---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 137887 0.67 0.495984
Target:  5'- cGCgUCGGCGaG-GCCCGAGUGCaccuuGGUGa -3'
miRNA:   3'- -CGaGGCCGC-CgCGGGCUCACG-----CCGCg -5'
7656 3' -64.9 NC_001973.1 + 21336 0.67 0.495984
Target:  5'- cGCgagCCGGC--CGCCCGAGuUGcCGGUGg -3'
miRNA:   3'- -CGa--GGCCGccGCGGGCUC-AC-GCCGCg -5'
7656 3' -64.9 NC_001973.1 + 39962 0.67 0.504978
Target:  5'- aGCcCCGGC-GCcUCCGGGccgaaGCGGCGCu -3'
miRNA:   3'- -CGaGGCCGcCGcGGGCUCa----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 109355 0.67 0.51404
Target:  5'- aGCUCCGcucggccguaGCGgucgacgaGCGCCuCGuAGgcGCGGCGCa -3'
miRNA:   3'- -CGAGGC----------CGC--------CGCGG-GC-UCa-CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 37774 0.67 0.51404
Target:  5'- -aUCgGGgGGCGCCgccGcGCGGCGCu -3'
miRNA:   3'- cgAGgCCgCCGCGGgcuCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 42023 0.67 0.51404
Target:  5'- --aCCGGCGaGCGUcgaccuggCCGAG-GUGaGCGCg -3'
miRNA:   3'- cgaGGCCGC-CGCG--------GGCUCaCGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 24125 0.66 0.523169
Target:  5'- aGC-CgGGCGaGCuCgCGGGUGCGcGCGCc -3'
miRNA:   3'- -CGaGgCCGC-CGcGgGCUCACGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 41792 0.66 0.523169
Target:  5'- ---aCGGCGG-GCgCGAGUG-GGUGCu -3'
miRNA:   3'- cgagGCCGCCgCGgGCUCACgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.