miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 35427 0.68 0.435258
Target:  5'- cGCUCgacgcgcaaCGcGCGGuCGUCgaCGAGgcgGCGGCGCa -3'
miRNA:   3'- -CGAG---------GC-CGCC-GCGG--GCUCa--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 115079 0.68 0.435258
Target:  5'- aUUCCGGCcucGGCGUCCGccga-GGCGCg -3'
miRNA:   3'- cGAGGCCG---CCGCGGGCucacgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 45799 0.68 0.435258
Target:  5'- uGCUCgaGGCGGCGUUgGGagucaaucuaguGUGCgccGGCGCg -3'
miRNA:   3'- -CGAGg-CCGCCGCGGgCU------------CACG---CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 42873 0.68 0.426935
Target:  5'- aGCgagCGGCGGCGCgUGAucUGCaGCGCg -3'
miRNA:   3'- -CGag-GCCGCCGCGgGCUc-ACGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 118120 0.67 0.469458
Target:  5'- cGCUCaagcaGGUGGCGCgCGAGcccaauacguuuUGCGugaagcugcaGCGCg -3'
miRNA:   3'- -CGAGg----CCGCCGCGgGCUC------------ACGC----------CGCG- -5'
7656 3' -64.9 NC_001973.1 + 4224 0.67 0.469458
Target:  5'- gGCgcgCCuGcCGGCGCUCGuuugcGUgaGCGGCGCg -3'
miRNA:   3'- -CGa--GGcC-GCCGCGGGCu----CA--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 96585 0.67 0.495984
Target:  5'- gGUggCGGCGGCGCUggCGAcgacgGCGGaCGCg -3'
miRNA:   3'- -CGagGCCGCCGCGG--GCUca---CGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 76986 0.67 0.493301
Target:  5'- uGUUCa-GCGGCGCCaCGcugaucaccucgucGGgcggcgGCGGCGCg -3'
miRNA:   3'- -CGAGgcCGCCGCGG-GC--------------UCa-----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 39251 0.67 0.487064
Target:  5'- cGCUuuGGUuuugagGGCGUcgCCGuc-GCGGCGCa -3'
miRNA:   3'- -CGAggCCG------CCGCG--GGCucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35664 0.67 0.487064
Target:  5'- cGCUgcaccaCGGC-GCGgCCGAcgGCGGCGCg -3'
miRNA:   3'- -CGAg-----GCCGcCGCgGGCUcaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 122542 0.67 0.478221
Target:  5'- aGCggCGGCGGCGCUgGuGgugGUGGUGg -3'
miRNA:   3'- -CGagGCCGCCGCGGgCuCa--CGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 59871 0.67 0.478221
Target:  5'- cCUCCGacgcgcGCGGC-CCCaacgGCGGCGCg -3'
miRNA:   3'- cGAGGC------CGCCGcGGGcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 101191 0.67 0.477341
Target:  5'- cGCgCCGGgcgaaauUGGCGCgCG-G-GCGGCGCu -3'
miRNA:   3'- -CGaGGCC-------GCCGCGgGCuCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 158677 0.67 0.469458
Target:  5'- -gUCCGGCgaagccGGCGgCCGAGcGC-GCGCc -3'
miRNA:   3'- cgAGGCCG------CCGCgGGCUCaCGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 83078 0.67 0.469458
Target:  5'- cCUCCGGCGaGCGgCg----GCGGCGCc -3'
miRNA:   3'- cGAGGCCGC-CGCgGgcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 40281 0.67 0.469458
Target:  5'- cGCUCUucaGGUGGCGUugaaagggcuCCGAGUGaaucuGGCGg -3'
miRNA:   3'- -CGAGG---CCGCCGCG----------GGCUCACg----CCGCg -5'
7656 3' -64.9 NC_001973.1 + 7826 0.69 0.394613
Target:  5'- cGCUCUcuguugagaacgGGCGGCGCCgcgcccguCGAGc-UGGCGCg -3'
miRNA:   3'- -CGAGG------------CCGCCGCGG--------GCUCacGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.