Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7656 | 3' | -64.9 | NC_001973.1 | + | 136483 | 0.66 | 0.560254 |
Target: 5'- --gCCGGCGGCGUggCCGAcGcUGUGGUacacGCg -3' miRNA: 3'- cgaGGCCGCCGCG--GGCU-C-ACGCCG----CG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 4020 | 0.66 | 0.560254 |
Target: 5'- cGCgCUGaGCGcGCGCUCGAacGUGUacacggGGCGCa -3' miRNA: 3'- -CGaGGC-CGC-CGCGGGCU--CACG------CCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 137189 | 0.66 | 0.560254 |
Target: 5'- cGCUCagccacucGCGGCGCgagUCGcGcgGCGGCGCg -3' miRNA: 3'- -CGAGgc------CGCCGCG---GGCuCa-CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 45613 | 0.66 | 0.569646 |
Target: 5'- aGCgcgUCGGCGaucagguccacGCGCUcguCGAGcGCGGCGUc -3' miRNA: 3'- -CGa--GGCCGC-----------CGCGG---GCUCaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 76476 | 0.66 | 0.569646 |
Target: 5'- gGCU-CGGCGGUGCCCGAcaacGUGUuccaGCc -3' miRNA: 3'- -CGAgGCCGCCGCGGGCU----CACGccg-CG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 137272 | 0.66 | 0.532359 |
Target: 5'- uGCggCGGCGGgGCUCGGccGCGcGCGUu -3' miRNA: 3'- -CGagGCCGCCgCGGGCUcaCGC-CGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 90306 | 0.66 | 0.523169 |
Target: 5'- cGCacagUCGGuCGGCGggCGAG-GCGGUGCg -3' miRNA: 3'- -CGa---GGCC-GCCGCggGCUCaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 35664 | 0.67 | 0.487064 |
Target: 5'- cGCUgcaccaCGGC-GCGgCCGAcgGCGGCGCg -3' miRNA: 3'- -CGAg-----GCCGcCGCgGGCUcaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 39251 | 0.67 | 0.487064 |
Target: 5'- cGCUuuGGUuuugagGGCGUcgCCGuc-GCGGCGCa -3' miRNA: 3'- -CGAggCCG------CCGCG--GGCucaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 76986 | 0.67 | 0.493301 |
Target: 5'- uGUUCa-GCGGCGCCaCGcugaucaccucgucGGgcggcgGCGGCGCg -3' miRNA: 3'- -CGAGgcCGCCGCGG-GC--------------UCa-----CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 96585 | 0.67 | 0.495984 |
Target: 5'- gGUggCGGCGGCGCUggCGAcgacgGCGGaCGCg -3' miRNA: 3'- -CGagGCCGCCGCGG--GCUca---CGCC-GCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 96752 | 0.67 | 0.495984 |
Target: 5'- --aCCGGa-GCGCCggCGAGUcggGCGGCGUg -3' miRNA: 3'- cgaGGCCgcCGCGG--GCUCA---CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 137887 | 0.67 | 0.495984 |
Target: 5'- cGCgUCGGCGaG-GCCCGAGUGCaccuuGGUGa -3' miRNA: 3'- -CGaGGCCGC-CgCGGGCUCACG-----CCGCg -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 21336 | 0.67 | 0.495984 |
Target: 5'- cGCgagCCGGC--CGCCCGAGuUGcCGGUGg -3' miRNA: 3'- -CGa--GGCCGccGCGGGCUC-AC-GCCGCg -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 39962 | 0.67 | 0.504978 |
Target: 5'- aGCcCCGGC-GCcUCCGGGccgaaGCGGCGCu -3' miRNA: 3'- -CGaGGCCGcCGcGGGCUCa----CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 109355 | 0.67 | 0.51404 |
Target: 5'- aGCUCCGcucggccguaGCGgucgacgaGCGCCuCGuAGgcGCGGCGCa -3' miRNA: 3'- -CGAGGC----------CGC--------CGCGG-GC-UCa-CGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 37774 | 0.67 | 0.51404 |
Target: 5'- -aUCgGGgGGCGCCgccGcGCGGCGCu -3' miRNA: 3'- cgAGgCCgCCGCGGgcuCaCGCCGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 42023 | 0.67 | 0.51404 |
Target: 5'- --aCCGGCGaGCGUcgaccuggCCGAG-GUGaGCGCg -3' miRNA: 3'- cgaGGCCGC-CGCG--------GGCUCaCGC-CGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 24125 | 0.66 | 0.523169 |
Target: 5'- aGC-CgGGCGaGCuCgCGGGUGCGcGCGCc -3' miRNA: 3'- -CGaGgCCGC-CGcGgGCUCACGC-CGCG- -5' |
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7656 | 3' | -64.9 | NC_001973.1 | + | 41792 | 0.66 | 0.523169 |
Target: 5'- ---aCGGCGG-GCgCGAGUG-GGUGCu -3' miRNA: 3'- cgagGCCGCCgCGgGCUCACgCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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