miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 42023 0.67 0.51404
Target:  5'- --aCCGGCGaGCGUcgaccuggCCGAG-GUGaGCGCg -3'
miRNA:   3'- cgaGGCCGC-CGCG--------GGCUCaCGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 39962 0.67 0.504978
Target:  5'- aGCcCCGGC-GCcUCCGGGccgaaGCGGCGCu -3'
miRNA:   3'- -CGaGGCCGcCGcGGGCUCa----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 96585 0.67 0.495984
Target:  5'- gGUggCGGCGGCGCUggCGAcgacgGCGGaCGCg -3'
miRNA:   3'- -CGagGCCGCCGCGG--GCUca---CGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 96752 0.67 0.495984
Target:  5'- --aCCGGa-GCGCCggCGAGUcggGCGGCGUg -3'
miRNA:   3'- cgaGGCCgcCGCGG--GCUCA---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 137887 0.67 0.495984
Target:  5'- cGCgUCGGCGaG-GCCCGAGUGCaccuuGGUGa -3'
miRNA:   3'- -CGaGGCCGC-CgCGGGCUCACG-----CCGCg -5'
7656 3' -64.9 NC_001973.1 + 21336 0.67 0.495984
Target:  5'- cGCgagCCGGC--CGCCCGAGuUGcCGGUGg -3'
miRNA:   3'- -CGa--GGCCGccGCGGGCUC-AC-GCCGCg -5'
7656 3' -64.9 NC_001973.1 + 76986 0.67 0.493301
Target:  5'- uGUUCa-GCGGCGCCaCGcugaucaccucgucGGgcggcgGCGGCGCg -3'
miRNA:   3'- -CGAGgcCGCCGCGG-GC--------------UCa-----CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 39251 0.67 0.487064
Target:  5'- cGCUuuGGUuuugagGGCGUcgCCGuc-GCGGCGCa -3'
miRNA:   3'- -CGAggCCG------CCGCG--GGCucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35664 0.67 0.487064
Target:  5'- cGCUgcaccaCGGC-GCGgCCGAcgGCGGCGCg -3'
miRNA:   3'- -CGAg-----GCCGcCGCgGGCUcaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 59871 0.67 0.478221
Target:  5'- cCUCCGacgcgcGCGGC-CCCaacgGCGGCGCg -3'
miRNA:   3'- cGAGGC------CGCCGcGGGcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 122542 0.67 0.478221
Target:  5'- aGCggCGGCGGCGCUgGuGgugGUGGUGg -3'
miRNA:   3'- -CGagGCCGCCGCGGgCuCa--CGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 101191 0.67 0.477341
Target:  5'- cGCgCCGGgcgaaauUGGCGCgCG-G-GCGGCGCu -3'
miRNA:   3'- -CGaGGCC-------GCCGCGgGCuCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 118120 0.67 0.469458
Target:  5'- cGCUCaagcaGGUGGCGCgCGAGcccaauacguuuUGCGugaagcugcaGCGCg -3'
miRNA:   3'- -CGAGg----CCGCCGCGgGCUC------------ACGC----------CGCG- -5'
7656 3' -64.9 NC_001973.1 + 4224 0.67 0.469458
Target:  5'- gGCgcgCCuGcCGGCGCUCGuuugcGUgaGCGGCGCg -3'
miRNA:   3'- -CGa--GGcC-GCCGCGGGCu----CA--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 40281 0.67 0.469458
Target:  5'- cGCUCUucaGGUGGCGUugaaagggcuCCGAGUGaaucuGGCGg -3'
miRNA:   3'- -CGAGG---CCGCCGCG----------GGCUCACg----CCGCg -5'
7656 3' -64.9 NC_001973.1 + 83078 0.67 0.469458
Target:  5'- cCUCCGGCGaGCGgCg----GCGGCGCc -3'
miRNA:   3'- cGAGGCCGC-CGCgGgcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 158677 0.67 0.469458
Target:  5'- -gUCCGGCgaagccGGCGgCCGAGcGC-GCGCc -3'
miRNA:   3'- cgAGGCCG------CCGCgGGCUCaCGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 38959 0.67 0.468586
Target:  5'- cGCgaagaggCCGGCGaGCGUuuauaaaCCGAcgGCGGUGCg -3'
miRNA:   3'- -CGa------GGCCGC-CGCG-------GGCUcaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 39396 0.68 0.452181
Target:  5'- uGCUCgaCGGCGcGCGCcaggucggCCGcGGUGaGGCGCg -3'
miRNA:   3'- -CGAG--GCCGC-CGCG--------GGC-UCACgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 110785 0.68 0.443675
Target:  5'- uGCUCCGGCGGCacgGCgacgacgacgaCGAG-GCcGCGCc -3'
miRNA:   3'- -CGAGGCCGCCG---CGg----------GCUCaCGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.