miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 5' -54.2 NC_001973.1 + 96755 0.66 0.952571
Target:  5'- gGAGCGCCGGCgagUCGGGcgGCGUgGcGGc -3'
miRNA:   3'- -CUCGCGGCUG---AGCCUugUGCAgUuCU- -5'
7656 5' -54.2 NC_001973.1 + 131784 0.66 0.952571
Target:  5'- cGGCgGCCGGCUCGGugaaggGGC-CGUCGAc- -3'
miRNA:   3'- cUCG-CGGCUGAGCC------UUGuGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 146107 0.66 0.952571
Target:  5'- cGGGCcgcggcgcugaGCCGGCUCGGgAGCGgGcCGGGGu -3'
miRNA:   3'- -CUCG-----------CGGCUGAGCC-UUGUgCaGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 153356 0.67 0.944018
Target:  5'- aGAGCGaggucgauuUCGACUCGG-ACGgGUCGgAGAa -3'
miRNA:   3'- -CUCGC---------GGCUGAGCCuUGUgCAGU-UCU- -5'
7656 5' -54.2 NC_001973.1 + 97116 0.67 0.934516
Target:  5'- uGGCG-CGACcUGGAGUugGUCGAGAa -3'
miRNA:   3'- cUCGCgGCUGaGCCUUGugCAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 130725 0.67 0.934516
Target:  5'- -cGCGUCGGC-CGGGGCAaucgaGuUCAAGAc -3'
miRNA:   3'- cuCGCGGCUGaGCCUUGUg----C-AGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 45601 0.67 0.929404
Target:  5'- -cGuCGCCGg--CGGAGCGCGUCGGcGAu -3'
miRNA:   3'- cuC-GCGGCugaGCCUUGUGCAGUU-CU- -5'
7656 5' -54.2 NC_001973.1 + 86116 0.67 0.929404
Target:  5'- uGGCGCUuucucaACUCGGAcCGCGUgGAGGu -3'
miRNA:   3'- cUCGCGGc-----UGAGCCUuGUGCAgUUCU- -5'
7656 5' -54.2 NC_001973.1 + 144452 0.67 0.929404
Target:  5'- -cGCGCgCGugUCGGGcgGCGUgCGGGAc -3'
miRNA:   3'- cuCGCG-GCugAGCCUugUGCA-GUUCU- -5'
7656 5' -54.2 NC_001973.1 + 117448 0.67 0.924051
Target:  5'- -cGuCGuuGGCUCGGAACACG-CAc-- -3'
miRNA:   3'- cuC-GCggCUGAGCCUUGUGCaGUucu -5'
7656 5' -54.2 NC_001973.1 + 106320 0.68 0.918456
Target:  5'- --aCGuCCGACUCGGAcgACGUCGcAGAc -3'
miRNA:   3'- cucGC-GGCUGAGCCUugUGCAGU-UCU- -5'
7656 5' -54.2 NC_001973.1 + 137712 0.68 0.918456
Target:  5'- uGGGCGCCGAUguggcuuucauuUCGGAGCAgG-CGAu- -3'
miRNA:   3'- -CUCGCGGCUG------------AGCCUUGUgCaGUUcu -5'
7656 5' -54.2 NC_001973.1 + 66389 0.68 0.906546
Target:  5'- cAGCGCCGACUCGaccaaGAGCAacgcCGUCu--- -3'
miRNA:   3'- cUCGCGGCUGAGC-----CUUGU----GCAGuucu -5'
7656 5' -54.2 NC_001973.1 + 74481 0.68 0.900234
Target:  5'- cAGCGCCcGCUCG--ACGCGUCGAa- -3'
miRNA:   3'- cUCGCGGcUGAGCcuUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 49996 0.68 0.900234
Target:  5'- uGAGCGUCGACUCGGuuCACa------ -3'
miRNA:   3'- -CUCGCGGCUGAGCCuuGUGcaguucu -5'
7656 5' -54.2 NC_001973.1 + 113898 0.68 0.900234
Target:  5'- ---aGCCGGCUCGcGAGCACGgcacgCAaaGGAa -3'
miRNA:   3'- cucgCGGCUGAGC-CUUGUGCa----GU--UCU- -5'
7656 5' -54.2 NC_001973.1 + 121226 0.69 0.849712
Target:  5'- cGAGCGCC-ACgcggCGGcgcGGCGCGUCGcAGAa -3'
miRNA:   3'- -CUCGCGGcUGa---GCC---UUGUGCAGU-UCU- -5'
7656 5' -54.2 NC_001973.1 + 121651 0.7 0.841649
Target:  5'- -cGCGCCGcCUCGaaGGGCGCGUCGc-- -3'
miRNA:   3'- cuCGCGGCuGAGC--CUUGUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 28999 0.7 0.833394
Target:  5'- aGGGCGCCGGCggcUGGGcacagcACGCGUCGcGGu -3'
miRNA:   3'- -CUCGCGGCUGa--GCCU------UGUGCAGUuCU- -5'
7656 5' -54.2 NC_001973.1 + 152883 0.7 0.824955
Target:  5'- -uGCGCCuGAacgugcUGGAGCACGUCAAGu -3'
miRNA:   3'- cuCGCGG-CUga----GCCUUGUGCAGUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.