miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7657 3' -68.4 NC_001973.1 + 92700 0.66 0.389946
Target:  5'- cCCGCCGCUcauuGCgCGuCCGCUucucgaGUCGACCGg -3'
miRNA:   3'- cGGCGGCGG----CG-GC-GGCGG------CGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 111515 0.66 0.387652
Target:  5'- cGCCGCgGUCGacggcggacaccucCUGCaCGCCGUCGGCa- -3'
miRNA:   3'- -CGGCGgCGGC--------------GGCG-GCGGCGGCUGgu -5'
7657 3' -68.4 NC_001973.1 + 139822 0.66 0.385366
Target:  5'- aGCCGCCGuuGCgauucacggacgacgCGCaccuGuCCGCgGACCGg -3'
miRNA:   3'- -CGGCGGCggCG---------------GCGg---C-GGCGgCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 4927 0.66 0.382333
Target:  5'- -aCGUCGgCGggcUCGUCGCCGaCCGGCCGg -3'
miRNA:   3'- cgGCGGCgGC---GGCGGCGGC-GGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 30956 0.66 0.382333
Target:  5'- uGUCgGUCGCCGCC-UCGCuCGCC-ACCAg -3'
miRNA:   3'- -CGG-CGGCGGCGGcGGCG-GCGGcUGGU- -5'
7657 3' -68.4 NC_001973.1 + 63106 0.66 0.382333
Target:  5'- uGCaCGCCGUggagaaggCGCCGCUuUCGuuGACCGc -3'
miRNA:   3'- -CG-GCGGCG--------GCGGCGGcGGCggCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 84309 0.66 0.382333
Target:  5'- gGCCG-CGuCCGCCGCCcaggacgucaGCUacgGCCGGCUg -3'
miRNA:   3'- -CGGCgGC-GGCGGCGG----------CGG---CGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 78630 0.66 0.381577
Target:  5'- gGCCGCgGgCGCuCGaggcgauUCGCCGCCGAUUu -3'
miRNA:   3'- -CGGCGgCgGCG-GC-------GGCGGCGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 3773 0.66 0.374819
Target:  5'- cGCgCGCgCGCC-CCGUCcacgGCCGCCGcgcacACCAa -3'
miRNA:   3'- -CG-GCG-GCGGcGGCGG----CGGCGGC-----UGGU- -5'
7657 3' -68.4 NC_001973.1 + 57214 0.66 0.374819
Target:  5'- gGCCGUCGacgaCGUCGagGUCGCCGACgCGg -3'
miRNA:   3'- -CGGCGGCg---GCGGCggCGGCGGCUG-GU- -5'
7657 3' -68.4 NC_001973.1 + 28139 0.66 0.374819
Target:  5'- cGCCGCCuuuaaaguaggGCuuggaCGUCG-CGCCGCCGACg- -3'
miRNA:   3'- -CGGCGG-----------CG-----GCGGCgGCGGCGGCUGgu -5'
7657 3' -68.4 NC_001973.1 + 94867 0.66 0.374073
Target:  5'- cCCGCUGCCGUacgacgcguggcuCGaaaacaaccgucCCGCCgaGCCGACCGg -3'
miRNA:   3'- cGGCGGCGGCG-------------GC------------GGCGG--CGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 137829 0.67 0.367406
Target:  5'- gGUCGUCGCgCGgCGCCGCCaucaGCgGGCgCAg -3'
miRNA:   3'- -CGGCGGCG-GCgGCGGCGG----CGgCUG-GU- -5'
7657 3' -68.4 NC_001973.1 + 35575 0.67 0.366671
Target:  5'- aGCCGCguuCGCCGgcuucuaCCG-CGCCGUCGACa- -3'
miRNA:   3'- -CGGCG---GCGGC-------GGCgGCGGCGGCUGgu -5'
7657 3' -68.4 NC_001973.1 + 18628 0.67 0.360095
Target:  5'- aGCCGCCGUucgaGCCGuCCGaCgGcCCGACgGg -3'
miRNA:   3'- -CGGCGGCGg---CGGC-GGC-GgC-GGCUGgU- -5'
7657 3' -68.4 NC_001973.1 + 121836 0.67 0.359369
Target:  5'- -aCGCgGCCcgaaccgguuucgGCCGCCGCgaCGCCcGCCAc -3'
miRNA:   3'- cgGCGgCGG-------------CGGCGGCG--GCGGcUGGU- -5'
7657 3' -68.4 NC_001973.1 + 88489 0.67 0.359369
Target:  5'- uGCCGCCGgCGCggCGCgGCUccauauuGuuGGCCAa -3'
miRNA:   3'- -CGGCGGCgGCG--GCGgCGG-------CggCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 33340 0.67 0.352885
Target:  5'- cGuuGCgGCCGCgGaugaUGCCcguGCCGGCCGc -3'
miRNA:   3'- -CggCGgCGGCGgCg---GCGG---CGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 158746 0.67 0.352885
Target:  5'- aGCUgaaGCCGgCGaCCGagCGCgCGCCGACCu -3'
miRNA:   3'- -CGG---CGGCgGC-GGCg-GCG-GCGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 81639 0.67 0.352885
Target:  5'- gGUCG-CGCgCGCCGCUuCgGCCGGCCc -3'
miRNA:   3'- -CGGCgGCG-GCGGCGGcGgCGGCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.