Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7657 | 5' | -51.1 | NC_001973.1 | + | 5900 | 0.66 | 0.991662 |
Target: 5'- gCGCGACGcGAACGAgaUCcucgcguCGCCCGc -3' miRNA: 3'- -GCGCUGU-CUUGCUgaAGuu-----GUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 8498 | 0.71 | 0.916152 |
Target: 5'- cCGCGAauggaacucgagcCGGGACGAUUgcgCGACGCUCGGc -3' miRNA: 3'- -GCGCU-------------GUCUUGCUGAa--GUUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 8797 | 0.66 | 0.992739 |
Target: 5'- aCGCGACGGAacccGCGGCgcgaagacaCGACgaGCCCGc -3' miRNA: 3'- -GCGCUGUCU----UGCUGaa-------GUUG--UGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 13370 | 0.66 | 0.991662 |
Target: 5'- gCGCGACGGAACaACaUUUAugGCCa-- -3' miRNA: 3'- -GCGCUGUCUUGcUG-AAGUugUGGguc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 15541 | 0.69 | 0.969774 |
Target: 5'- gCGCGAgCAGAucCGugUUguGCGCCCu- -3' miRNA: 3'- -GCGCU-GUCUu-GCugAAguUGUGGGuc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 23730 | 0.67 | 0.986037 |
Target: 5'- uCGCuGACGGGcccgACGGCgaCcGCGCCCGGc -3' miRNA: 3'- -GCG-CUGUCU----UGCUGaaGuUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 25364 | 0.67 | 0.984257 |
Target: 5'- aGCGGCucGACGGCaUCAAC-CCCGa -3' miRNA: 3'- gCGCUGucUUGCUGaAGUUGuGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 28103 | 0.71 | 0.920809 |
Target: 5'- uGCGGCGGAgcgACGACUgaacgcgauccuccUCGACGCCg-- -3' miRNA: 3'- gCGCUGUCU---UGCUGA--------------AGUUGUGGguc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 29679 | 0.75 | 0.73504 |
Target: 5'- uCGCGGCGGAcgGCGAgUUCcuCGCCCGa -3' miRNA: 3'- -GCGCUGUCU--UGCUgAAGuuGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 30398 | 0.67 | 0.987658 |
Target: 5'- gCGCGGCGGcGGCGGCggaGGCGCCgCGa -3' miRNA: 3'- -GCGCUGUC-UUGCUGaagUUGUGG-GUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 39436 | 0.77 | 0.631716 |
Target: 5'- uCGCGucCAGGGCGACgcCGAUGCCCAGc -3' miRNA: 3'- -GCGCu-GUCUUGCUGaaGUUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 40122 | 0.67 | 0.987658 |
Target: 5'- aGCGGgGGuGGCGAC-UCGucGCGCCCAu -3' miRNA: 3'- gCGCUgUC-UUGCUGaAGU--UGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 46408 | 0.66 | 0.995321 |
Target: 5'- gCGCGACGacGACGACUcgGACGCgaCCAGc -3' miRNA: 3'- -GCGCUGUc-UUGCUGAagUUGUG--GGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 46497 | 0.72 | 0.861816 |
Target: 5'- cCGCG-CGG-ACGGCcUCGGCGCCCGa -3' miRNA: 3'- -GCGCuGUCuUGCUGaAGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 48432 | 0.67 | 0.990462 |
Target: 5'- aGCGACGGu-CGugUUCAAUuccgcuCCCGu -3' miRNA: 3'- gCGCUGUCuuGCugAAGUUGu-----GGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 51523 | 0.7 | 0.943097 |
Target: 5'- cCGCGGCGGcugucGGCGAUaaauUUCAuguuaauucGCGCCCGGg -3' miRNA: 3'- -GCGCUGUC-----UUGCUG----AAGU---------UGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 52189 | 0.67 | 0.990462 |
Target: 5'- gCGCGGCGGGgucgcGCGACUcgagCAGCgACUCGa -3' miRNA: 3'- -GCGCUGUCU-----UGCUGAa---GUUG-UGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 59834 | 0.67 | 0.98913 |
Target: 5'- gCGCGACA--ACGccgcGCUggcCAGCGCCCAc -3' miRNA: 3'- -GCGCUGUcuUGC----UGAa--GUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 70102 | 0.67 | 0.986037 |
Target: 5'- gCGCGAgCGcGAACG-CcUCGGCGCCCGc -3' miRNA: 3'- -GCGCU-GU-CUUGCuGaAGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 73775 | 0.67 | 0.990335 |
Target: 5'- aCGCGGCGGGgaacucgaGCGAgUUCGccaggcucucgacGCGCUCGGu -3' miRNA: 3'- -GCGCUGUCU--------UGCUgAAGU-------------UGUGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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