miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7657 5' -51.1 NC_001973.1 + 70102 0.67 0.986037
Target:  5'- gCGCGAgCGcGAACG-CcUCGGCGCCCGc -3'
miRNA:   3'- -GCGCU-GU-CUUGCuGaAGUUGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 23730 0.67 0.986037
Target:  5'- uCGCuGACGGGcccgACGGCgaCcGCGCCCGGc -3'
miRNA:   3'- -GCG-CUGUCU----UGCUGaaGuUGUGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 25364 0.67 0.984257
Target:  5'- aGCGGCucGACGGCaUCAAC-CCCGa -3'
miRNA:   3'- gCGCUGucUUGCUGaAGUUGuGGGUc -5'
7657 5' -51.1 NC_001973.1 + 84279 0.68 0.975381
Target:  5'- gCGCGACAaagaggaccucGAACGGCgcaCGGCcgcguccgccGCCCAGg -3'
miRNA:   3'- -GCGCUGU-----------CUUGCUGaa-GUUG----------UGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 119307 0.69 0.969774
Target:  5'- uCGCGuucaAGAGCGGg-UCGGCGCCCGc -3'
miRNA:   3'- -GCGCug--UCUUGCUgaAGUUGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 15541 0.69 0.969774
Target:  5'- gCGCGAgCAGAucCGugUUguGCGCCCu- -3'
miRNA:   3'- -GCGCU-GUCUu-GCugAAguUGUGGGuc -5'
7657 5' -51.1 NC_001973.1 + 51523 0.7 0.943097
Target:  5'- cCGCGGCGGcugucGGCGAUaaauUUCAuguuaauucGCGCCCGGg -3'
miRNA:   3'- -GCGCUGUC-----UUGCUG----AAGU---------UGUGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 111937 0.71 0.922515
Target:  5'- gCGCGGCG--GCGACUUCucCgACCCGGc -3'
miRNA:   3'- -GCGCUGUcuUGCUGAAGuuG-UGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 28103 0.71 0.920809
Target:  5'- uGCGGCGGAgcgACGACUgaacgcgauccuccUCGACGCCg-- -3'
miRNA:   3'- gCGCUGUCU---UGCUGA--------------AGUUGUGGguc -5'
7657 5' -51.1 NC_001973.1 + 8498 0.71 0.916152
Target:  5'- cCGCGAauggaacucgagcCGGGACGAUUgcgCGACGCUCGGc -3'
miRNA:   3'- -GCGCU-------------GUCUUGCUGAa--GUUGUGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 46497 0.72 0.861816
Target:  5'- cCGCG-CGG-ACGGCcUCGGCGCCCGa -3'
miRNA:   3'- -GCGCuGUCuUGCUGaAGUUGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 83137 0.74 0.793154
Target:  5'- gGCGcucaAGAACGACUaCGACACCCuGa -3'
miRNA:   3'- gCGCug--UCUUGCUGAaGUUGUGGGuC- -5'
7657 5' -51.1 NC_001973.1 + 29679 0.75 0.73504
Target:  5'- uCGCGGCGGAcgGCGAgUUCcuCGCCCGa -3'
miRNA:   3'- -GCGCUGUCU--UGCUgAAGuuGUGGGUc -5'
7657 5' -51.1 NC_001973.1 + 39436 0.77 0.631716
Target:  5'- uCGCGucCAGGGCGACgcCGAUGCCCAGc -3'
miRNA:   3'- -GCGCu-GUCUUGCUGaaGUUGUGGGUC- -5'
7657 5' -51.1 NC_001973.1 + 144405 1.1 0.008298
Target:  5'- gCGCGACAGAACGACUUCAACACCCAGa -3'
miRNA:   3'- -GCGCUGUCUUGCUGAAGUUGUGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.