Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7658 | 3' | -60.5 | NC_001973.1 | + | 150182 | 0.67 | 0.652456 |
|
Target: 5'- uUUACGaGCCACAUagUGGGCCgCGGc -3' miRNA: 3'- uAGUGCaCGGUGUGg-ACCCGGaGCCa -5' |
|||||||
| 7658 | 3' | -60.5 | NC_001973.1 | + | 36311 | 0.67 | 0.632439 |
|
Target: 5'- -aCACGggcGCCGCggccgacgcgGCCgacgcGGGCCUCGGc -3' miRNA: 3'- uaGUGCa--CGGUG----------UGGa----CCCGGAGCCa -5' |
|||||||
| 7658 | 3' | -60.5 | NC_001973.1 | + | 53516 | 0.67 | 0.632439 |
|
Target: 5'- -aCACG-GCCGCGCCgucGGGCCUg--- -3' miRNA: 3'- uaGUGCaCGGUGUGGa--CCCGGAgcca -5' |
|||||||
| 7658 | 3' | -60.5 | NC_001973.1 | + | 21531 | 0.68 | 0.592458 |
|
Target: 5'- --gACGUGCCugAUCUcGGCgUCGGg -3' miRNA: 3'- uagUGCACGGugUGGAcCCGgAGCCa -5' |
|||||||
| 7658 | 3' | -60.5 | NC_001973.1 | + | 97833 | 0.69 | 0.514201 |
|
Target: 5'- cUCGCG-GCUGCACCauuUGGacGCCUCGGa -3' miRNA: 3'- uAGUGCaCGGUGUGG---ACC--CGGAGCCa -5' |
|||||||
| 7658 | 3' | -60.5 | NC_001973.1 | + | 56345 | 0.7 | 0.45837 |
|
Target: 5'- cUCGCG-GCCGCGCUcGGGCCccgacUCGGc -3' miRNA: 3'- uAGUGCaCGGUGUGGaCCCGG-----AGCCa -5' |
|||||||
| 7658 | 3' | -60.5 | NC_001973.1 | + | 143567 | 1.04 | 0.002188 |
|
Target: 5'- cAUCACGUGCCACACCUGGGCCUCGGUc -3' miRNA: 3'- -UAGUGCACGGUGUGGACCCGGAGCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home