miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7658 5' -63.5 NC_001973.1 + 10749 0.67 0.539116
Target:  5'- cGCAUCAgCGGCgGGuGCgcgaCGGGCUCGUc -3'
miRNA:   3'- -CGUGGU-GCCGgUC-CGg---GUCCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 124130 0.67 0.539116
Target:  5'- cGCGCgaACGGCUGGaGCaCCugcgcggcgAGGCUCGCu -3'
miRNA:   3'- -CGUGg-UGCCGGUC-CG-GG---------UCCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 132450 0.67 0.539116
Target:  5'- gGCGCCgGCgGGgCGcGGCCUcgucGGGCUCGCc -3'
miRNA:   3'- -CGUGG-UG-CCgGU-CCGGG----UCCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 43934 0.67 0.529716
Target:  5'- aCGCCcucgACGGCCgcgaAGGCCaccaGGcGCUCGCc -3'
miRNA:   3'- cGUGG----UGCCGG----UCCGGg---UC-CGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 112545 0.67 0.520377
Target:  5'- aGgGCCACGuacGCCuGGCCCGGcGCgaacaCGCa -3'
miRNA:   3'- -CgUGGUGC---CGGuCCGGGUC-CGa----GCGc -5'
7658 5' -63.5 NC_001973.1 + 55912 0.67 0.520377
Target:  5'- -nGCUcgGGCuCGGGCUCGGGCUCGgGc -3'
miRNA:   3'- cgUGGugCCG-GUCCGGGUCCGAGCgC- -5'
7658 5' -63.5 NC_001973.1 + 86041 0.67 0.520377
Target:  5'- --uCCuCGGCCuuccguuuGCCgAGGCUCGCGg -3'
miRNA:   3'- cguGGuGCCGGuc------CGGgUCCGAGCGC- -5'
7658 5' -63.5 NC_001973.1 + 17264 0.67 0.520377
Target:  5'- cCGCgGCGGCCGcGCaCuCGGGCaUCGCGu -3'
miRNA:   3'- cGUGgUGCCGGUcCG-G-GUCCG-AGCGC- -5'
7658 5' -63.5 NC_001973.1 + 46218 0.67 0.511102
Target:  5'- cGCGCgACGGCCGGGUCau-GUgCGCGc -3'
miRNA:   3'- -CGUGgUGCCGGUCCGGgucCGaGCGC- -5'
7658 5' -63.5 NC_001973.1 + 79176 0.67 0.500981
Target:  5'- aCGCCACGGaCGGcGUCCGGcugacgcGCUCGCa -3'
miRNA:   3'- cGUGGUGCCgGUC-CGGGUC-------CGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 109123 0.68 0.492766
Target:  5'- cCGCCGCGGCgGcGGCCUcuuGGGCgcCGCc -3'
miRNA:   3'- cGUGGUGCCGgU-CCGGG---UCCGa-GCGc -5'
7658 5' -63.5 NC_001973.1 + 34311 0.68 0.489135
Target:  5'- uGCGCCGCGGCgccaaCGGGUCCuuGGUguugagcucccagCGCGa -3'
miRNA:   3'- -CGUGGUGCCG-----GUCCGGGu-CCGa------------GCGC- -5'
7658 5' -63.5 NC_001973.1 + 18269 0.68 0.483712
Target:  5'- gGCGCaCACGGCCgacgaGGGCaCCAGcGCcaCGCu -3'
miRNA:   3'- -CGUG-GUGCCGG-----UCCG-GGUC-CGa-GCGc -5'
7658 5' -63.5 NC_001973.1 + 138635 0.68 0.477421
Target:  5'- uGCGCCagcgcggGCGGCaCGGGCUUuuggaaccuuucccaAGGCUCGaCGa -3'
miRNA:   3'- -CGUGG-------UGCCG-GUCCGGG---------------UCCGAGC-GC- -5'
7658 5' -63.5 NC_001973.1 + 56341 0.68 0.465848
Target:  5'- cGCGCuCGCGGCCGcGCUCGGGC-CcCGa -3'
miRNA:   3'- -CGUG-GUGCCGGUcCGGGUCCGaGcGC- -5'
7658 5' -63.5 NC_001973.1 + 87360 0.68 0.465848
Target:  5'- aGCAgCACGGCguGGUUgAGGCcguuguucUCGCa -3'
miRNA:   3'- -CGUgGUGCCGguCCGGgUCCG--------AGCGc -5'
7658 5' -63.5 NC_001973.1 + 122997 0.68 0.464964
Target:  5'- cCACCGCGGCCAGcaugagcGCCUcgaaGGGCgcCGCc -3'
miRNA:   3'- cGUGGUGCCGGUC-------CGGG----UCCGa-GCGc -5'
7658 5' -63.5 NC_001973.1 + 92275 0.68 0.457046
Target:  5'- gGCGCCACaaGGUgGGGCCUAgacGGCUCuaGCu -3'
miRNA:   3'- -CGUGGUG--CCGgUCCGGGU---CCGAG--CGc -5'
7658 5' -63.5 NC_001973.1 + 146071 0.68 0.448333
Target:  5'- gGCGCCGa-GCC-GGCUCGGGCggGCGg -3'
miRNA:   3'- -CGUGGUgcCGGuCCGGGUCCGagCGC- -5'
7658 5' -63.5 NC_001973.1 + 83656 0.68 0.439713
Target:  5'- aGCGCUGCGGC--GGCCC--GCUCGCu -3'
miRNA:   3'- -CGUGGUGCCGguCCGGGucCGAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.