miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7659 3' -52.7 NC_001973.1 + 1825 0.7 0.846646
Target:  5'- -cGAGCGCGCACac--GGCcaGGCUGUGg -3'
miRNA:   3'- gaCUUGUGCGUGgacuUCG--UCGACAC- -5'
7659 3' -52.7 NC_001973.1 + 11276 0.7 0.846646
Target:  5'- -cGAGCGCGCACac--GGCcaAGCUGUGg -3'
miRNA:   3'- gaCUUGUGCGUGgacuUCG--UCGACAC- -5'
7659 3' -52.7 NC_001973.1 + 16136 0.73 0.714703
Target:  5'- -cGAGCACGCGCCgcuacAGCAuucgucGCUGUGg -3'
miRNA:   3'- gaCUUGUGCGUGGacu--UCGU------CGACAC- -5'
7659 3' -52.7 NC_001973.1 + 23214 0.69 0.89899
Target:  5'- -cGAGCGCGCaguggcgcaggGCCUGgcGCuGCUGa- -3'
miRNA:   3'- gaCUUGUGCG-----------UGGACuuCGuCGACac -5'
7659 3' -52.7 NC_001973.1 + 28930 0.7 0.877944
Target:  5'- uUGGgcuuGCACGCGgCUGggGCGGCa--- -3'
miRNA:   3'- gACU----UGUGCGUgGACuuCGUCGacac -5'
7659 3' -52.7 NC_001973.1 + 35823 0.66 0.97061
Target:  5'- -cGuACACGCucaUGggGCcGCUGUGg -3'
miRNA:   3'- gaCuUGUGCGuggACuuCGuCGACAC- -5'
7659 3' -52.7 NC_001973.1 + 37739 0.67 0.95289
Target:  5'- uUGAcCACGCugcucGCCUGGcGGCGGCaGUGu -3'
miRNA:   3'- gACUuGUGCG-----UGGACU-UCGUCGaCAC- -5'
7659 3' -52.7 NC_001973.1 + 46338 0.73 0.735094
Target:  5'- -aGGGCGCGCugCUGcuGguGCUGUu -3'
miRNA:   3'- gaCUUGUGCGugGACuuCguCGACAc -5'
7659 3' -52.7 NC_001973.1 + 54963 0.66 0.967202
Target:  5'- -cGGGCACGCcgaugagGCCgGAGGCGGCg--- -3'
miRNA:   3'- gaCUUGUGCG-------UGGaCUUCGUCGacac -5'
7659 3' -52.7 NC_001973.1 + 58630 0.67 0.944129
Target:  5'- cCUGAAgACGCGCUUcGAcgccGGCGGC-GUGu -3'
miRNA:   3'- -GACUUgUGCGUGGA-CU----UCGUCGaCAC- -5'
7659 3' -52.7 NC_001973.1 + 58795 0.74 0.6731
Target:  5'- cCUGAGCGUGCGCgagCUGGAGCugcuGCUGUGc -3'
miRNA:   3'- -GACUUGUGCGUG---GACUUCGu---CGACAC- -5'
7659 3' -52.7 NC_001973.1 + 59706 0.69 0.885199
Target:  5'- aUGGACGuuugguUGCGCCUGuuucGGCuGCUGUGc -3'
miRNA:   3'- gACUUGU------GCGUGGACu---UCGuCGACAC- -5'
7659 3' -52.7 NC_001973.1 + 84360 0.66 0.978602
Target:  5'- -cGAGCGCGUgaaagccgACCUGucGCGGCUc-- -3'
miRNA:   3'- gaCUUGUGCG--------UGGACuuCGUCGAcac -5'
7659 3' -52.7 NC_001973.1 + 96096 0.66 0.975885
Target:  5'- gCUGAacgccauGCACGCcgGCCUGAAGcCGGCc--- -3'
miRNA:   3'- -GACU-------UGUGCG--UGGACUUC-GUCGacac -5'
7659 3' -52.7 NC_001973.1 + 107910 0.69 0.892216
Target:  5'- aCUGAGCGCcCACCguucGAAGCAGgCgacGUGg -3'
miRNA:   3'- -GACUUGUGcGUGGa---CUUCGUC-Ga--CAC- -5'
7659 3' -52.7 NC_001973.1 + 113396 0.77 0.486624
Target:  5'- aUGAugACGCACCUGGgcuugacgGGCAGCggcGUGc -3'
miRNA:   3'- gACUugUGCGUGGACU--------UCGUCGa--CAC- -5'
7659 3' -52.7 NC_001973.1 + 115399 0.69 0.885199
Target:  5'- gCUGAGCGCGCACgauucGCGGCUGc- -3'
miRNA:   3'- -GACUUGUGCGUGgacuuCGUCGACac -5'
7659 3' -52.7 NC_001973.1 + 115655 0.67 0.943665
Target:  5'- gUGGACAgcCGCGgCUGGgccgacgAGCAGCUGg- -3'
miRNA:   3'- gACUUGU--GCGUgGACU-------UCGUCGACac -5'
7659 3' -52.7 NC_001973.1 + 133568 0.69 0.89899
Target:  5'- gCUGAACACGUugUUGGcgAGCAGUUu-- -3'
miRNA:   3'- -GACUUGUGCGugGACU--UCGUCGAcac -5'
7659 3' -52.7 NC_001973.1 + 136364 0.67 0.956903
Target:  5'- aUGAAgcCGCAUCUGGAGCAGUa--- -3'
miRNA:   3'- gACUUguGCGUGGACUUCGUCGacac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.