Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7659 | 3' | -52.7 | NC_001973.1 | + | 11276 | 0.7 | 0.846646 |
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Target: 5'- -cGAGCGCGCACac--GGCcaAGCUGUGg -3' miRNA: 3'- gaCUUGUGCGUGgacuUCG--UCGACAC- -5' |
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| 7659 | 3' | -52.7 | NC_001973.1 | + | 46338 | 0.73 | 0.735094 |
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Target: 5'- -aGGGCGCGCugCUGcuGguGCUGUu -3' miRNA: 3'- gaCUUGUGCGugGACuuCguCGACAc -5' |
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| 7659 | 3' | -52.7 | NC_001973.1 | + | 16136 | 0.73 | 0.714703 |
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Target: 5'- -cGAGCACGCGCCgcuacAGCAuucgucGCUGUGg -3' miRNA: 3'- gaCUUGUGCGUGGacu--UCGU------CGACAC- -5' |
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| 7659 | 3' | -52.7 | NC_001973.1 | + | 58795 | 0.74 | 0.6731 |
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Target: 5'- cCUGAGCGUGCGCgagCUGGAGCugcuGCUGUGc -3' miRNA: 3'- -GACUUGUGCGUG---GACUUCGu---CGACAC- -5' |
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| 7659 | 3' | -52.7 | NC_001973.1 | + | 113396 | 0.77 | 0.486624 |
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Target: 5'- aUGAugACGCACCUGGgcuugacgGGCAGCggcGUGc -3' miRNA: 3'- gACUugUGCGUGGACU--------UCGUCGa--CAC- -5' |
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| 7659 | 3' | -52.7 | NC_001973.1 | + | 143002 | 1.08 | 0.005815 |
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Target: 5'- aCUGAACACGCACCUGAAGCAGCUGUGc -3' miRNA: 3'- -GACUUGUGCGUGGACUUCGUCGACAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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