Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7659 | 5' | -59.3 | NC_001973.1 | + | 158627 | 0.66 | 0.792981 |
Target: 5'- uGCCGCcGCC-CGgcgcgccCGAcGACCCGUUCg -3' miRNA: 3'- -UGGUGcCGGaGCa------GCUcCUGGGCAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 144977 | 0.66 | 0.813651 |
Target: 5'- gGCCAcCGGCagcccaUCGUCGAGGAggacuucuuggcggcUCCGg-- -3' miRNA: 3'- -UGGU-GCCGg-----AGCAGCUCCU---------------GGGCaag -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 143490 | 0.74 | 0.358533 |
Target: 5'- uCCGCGGCgUCGUCGAGGGUCaCGcUCa -3' miRNA: 3'- uGGUGCCGgAGCAGCUCCUGG-GCaAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 143039 | 1.09 | 0.00168 |
Target: 5'- uACCACGGCCUCGUCGAGGACCCGUUCg -3' miRNA: 3'- -UGGUGCCGGAGCAGCUCCUGGGCAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 139046 | 0.66 | 0.810266 |
Target: 5'- uGCCGCGGaagUCGgCGAaGugCCGUUCg -3' miRNA: 3'- -UGGUGCCgg-AGCaGCUcCugGGCAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 132462 | 0.72 | 0.458519 |
Target: 5'- -gCGCGGCCUCGUCGGGcucGCCgCGaUCa -3' miRNA: 3'- ugGUGCCGGAGCAGCUCc--UGG-GCaAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 124809 | 0.66 | 0.775153 |
Target: 5'- gGCCGgGGCCUCGaucggacggUCGAGGA---GUUCg -3' miRNA: 3'- -UGGUgCCGGAGC---------AGCUCCUgggCAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 103910 | 0.66 | 0.810266 |
Target: 5'- cGCCGCGGCg-CGaCGAGGAgCgCGUcgUCg -3' miRNA: 3'- -UGGUGCCGgaGCaGCUCCUgG-GCA--AG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 80082 | 0.7 | 0.571543 |
Target: 5'- gGCgCuuGGCCgUCGUCGAGGuCUCGUUg -3' miRNA: 3'- -UG-GugCCGG-AGCAGCUCCuGGGCAAg -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 77870 | 0.67 | 0.756845 |
Target: 5'- uCCaACGGCCcacCGUCGAgcccgaGGACCUGUg- -3' miRNA: 3'- uGG-UGCCGGa--GCAGCU------CCUGGGCAag -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 57329 | 0.75 | 0.314586 |
Target: 5'- uCCGCGGCCUCGUCcGAGGGCagCUcUUCg -3' miRNA: 3'- uGGUGCCGGAGCAG-CUCCUG--GGcAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 55416 | 0.7 | 0.590197 |
Target: 5'- aACgACGGUUUCGUCGGcggcggcGGGCCCGa-- -3' miRNA: 3'- -UGgUGCCGGAGCAGCU-------CCUGGGCaag -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 53516 | 0.66 | 0.810266 |
Target: 5'- -aCACGGCCgCGcCGucGGGCCUGUa- -3' miRNA: 3'- ugGUGCCGGaGCaGCu-CCUGGGCAag -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 45881 | 0.66 | 0.792981 |
Target: 5'- gGCCGCGGCgcugCUCGUCGAcuucgagacGGcACCgacgUGUUCg -3' miRNA: 3'- -UGGUGCCG----GAGCAGCU---------CC-UGG----GCAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 39815 | 0.69 | 0.601045 |
Target: 5'- gGCCACGGCCUcCGaCaGGGGCuCCGcgCg -3' miRNA: 3'- -UGGUGCCGGA-GCaGcUCCUG-GGCaaG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 36318 | 0.68 | 0.660444 |
Target: 5'- cGCCGCGGCCgacgCGgcCGAcgcGGGCCucggCGUUCa -3' miRNA: 3'- -UGGUGCCGGa---GCa-GCU---CCUGG----GCAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 34019 | 0.67 | 0.756845 |
Target: 5'- uCCACGGCC-CgGUCGAGG-UUCGUg- -3' miRNA: 3'- uGGUGCCGGaG-CAGCUCCuGGGCAag -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 27867 | 0.66 | 0.775153 |
Target: 5'- gGCCGCGGCCgCGggCGcGGGCgCGcUCu -3' miRNA: 3'- -UGGUGCCGGaGCa-GCuCCUGgGCaAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 24304 | 0.72 | 0.467513 |
Target: 5'- gACCACGGCgCgCGUCGAcgccgaagaGGugCUGUUCc -3' miRNA: 3'- -UGGUGCCG-GaGCAGCU---------CCugGGCAAG- -5' |
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7659 | 5' | -59.3 | NC_001973.1 | + | 23719 | 0.66 | 0.801695 |
Target: 5'- aGCCGCuGGgCUCGcUGAcGGGCCCGa-- -3' miRNA: 3'- -UGGUG-CCgGAGCaGCU-CCUGGGCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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