Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7660 | 3' | -60.4 | NC_001973.1 | + | 6417 | 0.69 | 0.596394 |
Target: 5'- gCgCggCGGcgGCGCGCCGACGAGCgCGc -3' miRNA: 3'- aGgGgaGCCa-CGUGCGGUUGCUCG-GC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 54957 | 0.69 | 0.596394 |
Target: 5'- gUUCag-CGG-GCACGCCGAUGAGgCCGg -3' miRNA: 3'- -AGGggaGCCaCGUGCGGUUGCUC-GGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 158828 | 0.69 | 0.586596 |
Target: 5'- -gCCggCGGccgaGCGCGCgGACGAGCCGc -3' miRNA: 3'- agGGgaGCCa---CGUGCGgUUGCUCGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 121461 | 0.69 | 0.567098 |
Target: 5'- gCCCCgcCGGaauauggGCGCGCCcggccaaacGCGAGCCGc -3' miRNA: 3'- aGGGGa-GCCa------CGUGCGGu--------UGCUCGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 4643 | 0.69 | 0.547769 |
Target: 5'- cCCUgUCGGcgGCggGCGCCGucgGCGAGUCGg -3' miRNA: 3'- aGGGgAGCCa-CG--UGCGGU---UGCUCGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 53854 | 0.7 | 0.538181 |
Target: 5'- gCCCCggCGGcgGCgGCGCCGcCGAGCgCGg -3' miRNA: 3'- aGGGGa-GCCa-CG-UGCGGUuGCUCG-GC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 18261 | 0.7 | 0.509788 |
Target: 5'- gUCCCgUCGGcGCACacgGCCGACGAGggcaCCa -3' miRNA: 3'- -AGGGgAGCCaCGUG---CGGUUGCUC----GGc -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 26617 | 0.7 | 0.509788 |
Target: 5'- cUCCCgUUUGGcgGCuuccaaguccGCGCCGGCGGGCCa -3' miRNA: 3'- -AGGG-GAGCCa-CG----------UGCGGUUGCUCGGc -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 40041 | 0.7 | 0.508852 |
Target: 5'- gCCUgagCUCGGUguacagcucgcGCACGCCGucccacacgcucaGCGGGCCGa -3' miRNA: 3'- aGGG---GAGCCA-----------CGUGCGGU-------------UGCUCGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 22960 | 0.7 | 0.500461 |
Target: 5'- aUCCUCgaguacgcgCGGcgGCGCGCCGACGccgacGCCGa -3' miRNA: 3'- -AGGGGa--------GCCa-CGUGCGGUUGCu----CGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 17339 | 0.71 | 0.48204 |
Target: 5'- gUCCCgUgGGgGuCACGCCGauuucgcgGCGAGCCGu -3' miRNA: 3'- -AGGGgAgCCaC-GUGCGGU--------UGCUCGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 31366 | 0.71 | 0.48204 |
Target: 5'- gUCgCCgcggCGGUGUGCGCCAGCGAcgGCa- -3' miRNA: 3'- -AGgGGa---GCCACGUGCGGUUGCU--CGgc -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 63095 | 0.71 | 0.455045 |
Target: 5'- gUUCaCgUUGGUGCACGCCGugGAGaaGg -3' miRNA: 3'- -AGG-GgAGCCACGUGCGGUugCUCggC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 33000 | 0.71 | 0.434912 |
Target: 5'- aCCgCCUCGGccguggcGCACuugauguucaaccaGCCGACGAGCCa -3' miRNA: 3'- aGG-GGAGCCa------CGUG--------------CGGUUGCUCGGc -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 74729 | 0.72 | 0.428887 |
Target: 5'- cUCCCCgugCGG-GCACuCCAcauCGAGCCa -3' miRNA: 3'- -AGGGGa--GCCaCGUGcGGUu--GCUCGGc -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 107548 | 0.72 | 0.420367 |
Target: 5'- --gCUUCGG-GCGCGCCGACGAcCCGa -3' miRNA: 3'- aggGGAGCCaCGUGCGGUUGCUcGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 121299 | 0.74 | 0.319526 |
Target: 5'- gUCgCCCgCGGcGCGCGCCGGCGGacgcGCCGa -3' miRNA: 3'- -AG-GGGaGCCaCGUGCGGUUGCU----CGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 109137 | 0.76 | 0.22707 |
Target: 5'- gCCUCUUGG-GCGcCGCCucGACGAGCCGg -3' miRNA: 3'- aGGGGAGCCaCGU-GCGG--UUGCUCGGC- -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 67689 | 0.81 | 0.1089 |
Target: 5'- gUCCacgauCUCGGUGUACGCCAGCGGGCg- -3' miRNA: 3'- -AGGg----GAGCCACGUGCGGUUGCUCGgc -5' |
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7660 | 3' | -60.4 | NC_001973.1 | + | 141370 | 1.08 | 0.001502 |
Target: 5'- uUCCCCUCGGUGCACGCCAACGAGCCGu -3' miRNA: 3'- -AGGGGAGCCACGUGCGGUUGCUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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