Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7660 | 5' | -57 | NC_001973.1 | + | 141409 | 1.09 | 0.002129 |
Target: 5'- gUGCGGCCCGACAUCGUGCAGCUGAAGg -3' miRNA: 3'- -ACGCCGGGCUGUAGCACGUCGACUUC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 71453 | 0.74 | 0.411647 |
Target: 5'- aGCGGCCUGGuggcCAaCGUGCAGCUGu-- -3' miRNA: 3'- aCGCCGGGCU----GUaGCACGUCGACuuc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 108451 | 0.74 | 0.420354 |
Target: 5'- cGCGacGCCCG-CAcCGUGUGGCUGGAGa -3' miRNA: 3'- aCGC--CGGGCuGUaGCACGUCGACUUC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 115664 | 0.74 | 0.44713 |
Target: 5'- cGCGGCUgGGCcgaCGaGCAGCUGGAGa -3' miRNA: 3'- aCGCCGGgCUGua-GCaCGUCGACUUC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 83794 | 0.73 | 0.48425 |
Target: 5'- cGCGGCCCGGCAcUCGgacgAGCUGGGc -3' miRNA: 3'- aCGCCGGGCUGU-AGCacg-UCGACUUc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 89612 | 0.72 | 0.513032 |
Target: 5'- cGUGGCCgGGCA-CGUGCGGCUu--- -3' miRNA: 3'- aCGCCGGgCUGUaGCACGUCGAcuuc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 87839 | 0.72 | 0.522783 |
Target: 5'- aGCGGCCCcuUGUCGgGCGGCUGGu- -3' miRNA: 3'- aCGCCGGGcuGUAGCaCGUCGACUuc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 95252 | 0.71 | 0.62323 |
Target: 5'- gUGCuGCCCucCAUCG-GCGGCUGGAc -3' miRNA: 3'- -ACGcCGGGcuGUAGCaCGUCGACUUc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 30388 | 0.71 | 0.62323 |
Target: 5'- gUGCGGgCCGGCGcggCGgcgGCGGCgGAGGc -3' miRNA: 3'- -ACGCCgGGCUGUa--GCa--CGUCGaCUUC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 150203 | 0.7 | 0.663983 |
Target: 5'- cGCGGCUCGGCcUCG-GCuuGCUGGGc -3' miRNA: 3'- aCGCCGGGCUGuAGCaCGu-CGACUUc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 84226 | 0.7 | 0.674128 |
Target: 5'- aGCGGCCUGACGagGagguUGCAGgaGAGc -3' miRNA: 3'- aCGCCGGGCUGUagC----ACGUCgaCUUc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 143149 | 0.7 | 0.674128 |
Target: 5'- gUGCGuGCCCG-CAUCGacgccggGCGGCUGcguGGa -3' miRNA: 3'- -ACGC-CGGGCuGUAGCa------CGUCGACu--UC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 63960 | 0.68 | 0.762836 |
Target: 5'- gGCGGCUCGGCAacgugaaccuguUCGacgUGCAGCcGGAu -3' miRNA: 3'- aCGCCGGGCUGU------------AGC---ACGUCGaCUUc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 28906 | 0.68 | 0.772238 |
Target: 5'- aUGCGGUCCaGCAgcuccgagUCGUugggcuugcacGCGGCUGggGc -3' miRNA: 3'- -ACGCCGGGcUGU--------AGCA-----------CGUCGACuuC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 146506 | 0.68 | 0.781516 |
Target: 5'- -cUGGCCCGcgggauCGUCGgGCAGCaGAGGg -3' miRNA: 3'- acGCCGGGCu-----GUAGCaCGUCGaCUUC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 93837 | 0.68 | 0.781516 |
Target: 5'- gUGCcccaacCCCGugGcCGUGUGGCUGAAGg -3' miRNA: 3'- -ACGcc----GGGCugUaGCACGUCGACUUC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 40496 | 0.68 | 0.790661 |
Target: 5'- aGCGGCCUGAuCAcCGUGaCGGCgUGGc- -3' miRNA: 3'- aCGCCGGGCU-GUaGCAC-GUCG-ACUuc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 105486 | 0.67 | 0.807639 |
Target: 5'- aUGUGGCCgGGCG-CGUugccgccGUAGUUGAGGu -3' miRNA: 3'- -ACGCCGGgCUGUaGCA-------CGUCGACUUC- -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 120403 | 0.67 | 0.808517 |
Target: 5'- cGCcGCCCGACGUCaGgcccCAGCUGGGc -3' miRNA: 3'- aCGcCGGGCUGUAG-Cac--GUCGACUUc -5' |
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7660 | 5' | -57 | NC_001973.1 | + | 145012 | 0.67 | 0.808517 |
Target: 5'- gGCGGCuCCGGCGgcgcccgaGUGCGGCgcGAGc -3' miRNA: 3'- aCGCCG-GGCUGUag------CACGUCGa-CUUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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