miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 3' -53.6 NC_001973.1 + 14605 0.67 0.956667
Target:  5'- gACGCGguGGCCGcccggcuGUCG-GUGcgCGAc -3'
miRNA:   3'- -UGCGCguUCGGCu------UAGCgCACaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 28076 0.67 0.956667
Target:  5'- cGCGCGCGGGCaCGAcgaggacgucAUUGCGgcgGagCGAc -3'
miRNA:   3'- -UGCGCGUUCG-GCU----------UAGCGCa--CaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 84110 0.67 0.956283
Target:  5'- aGCGCGCGgagagcgacgcGGCCGAucucagaaaucgaGUCGCGcaacUCGAg -3'
miRNA:   3'- -UGCGCGU-----------UCGGCU-------------UAGCGCaca-AGCU- -5'
7661 3' -53.6 NC_001973.1 + 122117 0.67 0.952732
Target:  5'- cGCGCGCGAGCUG---CGCGaaaUCGAc -3'
miRNA:   3'- -UGCGCGUUCGGCuuaGCGCacaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 17830 0.67 0.948563
Target:  5'- gACGCGCc-GUCGAggGUgGCGUGcccgUCGAa -3'
miRNA:   3'- -UGCGCGuuCGGCU--UAgCGCACa---AGCU- -5'
7661 3' -53.6 NC_001973.1 + 103215 0.67 0.947267
Target:  5'- aAUGCGCAAcucGCCGAcgacggcggacgccAUCGCGUGgacCGc -3'
miRNA:   3'- -UGCGCGUU---CGGCU--------------UAGCGCACaa-GCu -5'
7661 3' -53.6 NC_001973.1 + 65623 0.67 0.944158
Target:  5'- gACGCGCuagcGCCGAG-CGCGc--UCGAg -3'
miRNA:   3'- -UGCGCGuu--CGGCUUaGCGCacaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 109302 0.67 0.939514
Target:  5'- aGCGCGCGucggGGUCGAGgagCGCGUcgcGcgCGAa -3'
miRNA:   3'- -UGCGCGU----UCGGCUUa--GCGCA---CaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 90023 0.67 0.939514
Target:  5'- cACGUGCAauaAG-CGAAgcggCGCGUGUUCc- -3'
miRNA:   3'- -UGCGCGU---UCgGCUUa---GCGCACAAGcu -5'
7661 3' -53.6 NC_001973.1 + 63620 0.67 0.939514
Target:  5'- cGCGCGCAcGGCCaAAUCggccGCGUGgggCGGc -3'
miRNA:   3'- -UGCGCGU-UCGGcUUAG----CGCACaa-GCU- -5'
7661 3' -53.6 NC_001973.1 + 47801 0.68 0.934628
Target:  5'- cCGCGCcGGCCGA--CGCGUGcgCc- -3'
miRNA:   3'- uGCGCGuUCGGCUuaGCGCACaaGcu -5'
7661 3' -53.6 NC_001973.1 + 139885 0.68 0.924126
Target:  5'- uCG-GCAAGCuCGAG-CGCGUGgugUCGGu -3'
miRNA:   3'- uGCgCGUUCG-GCUUaGCGCACa--AGCU- -5'
7661 3' -53.6 NC_001973.1 + 152439 0.68 0.924126
Target:  5'- gGCGCGCAGGCUu-AUCGCGcgg-CGGc -3'
miRNA:   3'- -UGCGCGUUCGGcuUAGCGCacaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 35410 0.68 0.924126
Target:  5'- cGCGCGCAAGUCuu-UCGCGc--UCGAc -3'
miRNA:   3'- -UGCGCGUUCGGcuuAGCGCacaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 58636 0.68 0.91851
Target:  5'- gACGCGCuucgacGCCGGcg-GCGUGUUCa- -3'
miRNA:   3'- -UGCGCGuu----CGGCUuagCGCACAAGcu -5'
7661 3' -53.6 NC_001973.1 + 80188 0.68 0.91851
Target:  5'- gGCGaGCAGGCCGAG-CGCGcacgccgUCGAg -3'
miRNA:   3'- -UGCgCGUUCGGCUUaGCGCaca----AGCU- -5'
7661 3' -53.6 NC_001973.1 + 15538 0.68 0.916778
Target:  5'- uGCGCGCGAGCa-GAUC-CGUGUugugcgcccuccauUCGAu -3'
miRNA:   3'- -UGCGCGUUCGgcUUAGcGCACA--------------AGCU- -5'
7661 3' -53.6 NC_001973.1 + 118348 0.68 0.912652
Target:  5'- uCGUGCGcGCCGugaagCGCGaGUUCGAc -3'
miRNA:   3'- uGCGCGUuCGGCuua--GCGCaCAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 130801 0.69 0.906552
Target:  5'- uACGCGUcGGCCgGggUCGauCGaGUUCGAg -3'
miRNA:   3'- -UGCGCGuUCGG-CuuAGC--GCaCAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 84362 0.69 0.886827
Target:  5'- aGCGCGUgaAAGCCGAccuGUCGCGgcucacCGAc -3'
miRNA:   3'- -UGCGCG--UUCGGCU---UAGCGCacaa--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.