miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 5' -58.2 NC_001973.1 + 94162 0.66 0.830909
Target:  5'- -uCCGAGCcGAugaagacccauuguaACGCCGGC--GACGUg -3'
miRNA:   3'- cuGGCUCGaCU---------------UGCGGCCGagCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 3891 0.66 0.827632
Target:  5'- cGACCGAggcgucGCUcuGCGCCGGgUagacgGGCGCg -3'
miRNA:   3'- -CUGGCU------CGAcuUGCGGCCgAg----CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 6206 0.66 0.827632
Target:  5'- aACCGgcGGCgcggUGCCGGCgCGGCGCc -3'
miRNA:   3'- cUGGC--UCGacuuGCGGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 158350 0.66 0.826808
Target:  5'- -cCCGcGCcc-GCGCCGGCUCGucaacccGCGCc -3'
miRNA:   3'- cuGGCuCGacuUGCGGCCGAGC-------UGCG- -5'
7661 5' -58.2 NC_001973.1 + 40178 0.66 0.825156
Target:  5'- -cCCGAGCUGAucugcacgacgggcACGUCuccgaacaGGUgCGACGCg -3'
miRNA:   3'- cuGGCUCGACU--------------UGCGG--------CCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 88542 0.67 0.819322
Target:  5'- -uUC-AGCaGGuccACGCCGGCgUCGGCGCg -3'
miRNA:   3'- cuGGcUCGaCU---UGCGGCCG-AGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 21720 0.67 0.819322
Target:  5'- aACCGcgccGCUGGcguCGCCGGacaaGACGCa -3'
miRNA:   3'- cUGGCu---CGACUu--GCGGCCgag-CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 126105 0.67 0.819322
Target:  5'- uGCCGAcGCgUGAGCccgGCCGGgUuaaUGACGCa -3'
miRNA:   3'- cUGGCU-CG-ACUUG---CGGCCgA---GCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 7062 0.67 0.819322
Target:  5'- --aCGAGCUGcGCGCCcuGgUCGAgCGCg -3'
miRNA:   3'- cugGCUCGACuUGCGGc-CgAGCU-GCG- -5'
7661 5' -58.2 NC_001973.1 + 9628 0.67 0.819322
Target:  5'- cGAUCGccGCUG-GCGuUCGGCUCGaggGCGCg -3'
miRNA:   3'- -CUGGCu-CGACuUGC-GGCCGAGC---UGCG- -5'
7661 5' -58.2 NC_001973.1 + 13933 0.67 0.819322
Target:  5'- cACCGcAGaUGGcGCGCCGGCaagcaGACGCa -3'
miRNA:   3'- cUGGC-UCgACU-UGCGGCCGag---CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 20082 0.67 0.819322
Target:  5'- cGCCGAGC-GAGCacacgGCCaGGCU-GugGCa -3'
miRNA:   3'- cUGGCUCGaCUUG-----CGG-CCGAgCugCG- -5'
7661 5' -58.2 NC_001973.1 + 84678 0.67 0.819322
Target:  5'- cGCCGAGCUGgu-GCCucaggaGGUUCaaGACGCg -3'
miRNA:   3'- cUGGCUCGACuugCGG------CCGAG--CUGCG- -5'
7661 5' -58.2 NC_001973.1 + 106942 0.67 0.819322
Target:  5'- -cCCGcGUUGAauuucagcGCGCCGggcgcGCUCGGCGUg -3'
miRNA:   3'- cuGGCuCGACU--------UGCGGC-----CGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 128120 0.67 0.819322
Target:  5'- cGCCGAGC-GAGCacacgGCCaGGCU-GugGCa -3'
miRNA:   3'- cUGGCUCGaCUUG-----CGG-CCGAgCugCG- -5'
7661 5' -58.2 NC_001973.1 + 134333 0.67 0.819322
Target:  5'- -cCCGGGCgUGuACGUgGuggcGCUCGACGCc -3'
miRNA:   3'- cuGGCUCG-ACuUGCGgC----CGAGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 41110 0.67 0.816797
Target:  5'- cGCCGAGCUcGAGuuuggucauuuaguUGUCGGCggCGGCGg -3'
miRNA:   3'- cUGGCUCGA-CUU--------------GCGGCCGa-GCUGCg -5'
7661 5' -58.2 NC_001973.1 + 101193 0.67 0.810851
Target:  5'- cGCCGGGCgaaauuGGCGCgCGGg-CGGCGCu -3'
miRNA:   3'- cUGGCUCGac----UUGCG-GCCgaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 41058 0.67 0.810851
Target:  5'- cAUCGGGCuUGAACccgaucgaccCCGGC-CGGCGCg -3'
miRNA:   3'- cUGGCUCG-ACUUGc---------GGCCGaGCUGCG- -5'
7661 5' -58.2 NC_001973.1 + 89614 0.67 0.810851
Target:  5'- uGGCCGGGC---ACGUgCGGCUUcGCGCg -3'
miRNA:   3'- -CUGGCUCGacuUGCG-GCCGAGcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.