miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 131797 0.67 0.962027
Target:  5'- gGUgAAGGGGCCGuCGAcgCCCaaGCGACAc -3'
miRNA:   3'- aCG-UUUUUCGGCuGCUa-GGG--CGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 8424 0.67 0.958384
Target:  5'- gGCAAGAGccGCCGcgucguCGcgCCCGuCGACGa -3'
miRNA:   3'- aCGUUUUU--CGGCu-----GCuaGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 80452 0.67 0.965443
Target:  5'- cGCGGucuGgCGGCGGUCCgGCGcCAg -3'
miRNA:   3'- aCGUUuuuCgGCUGCUAGGgCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 104000 0.67 0.968636
Target:  5'- aGCAGccuagccGGGCCGuCGA-CUCGCGGCGc -3'
miRNA:   3'- aCGUUu------UUCGGCuGCUaGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 94146 0.67 0.971614
Target:  5'- cGCGGAccuggcgccguccGAGCCGAUGAagacccauuguaacgCCgGCGACGu -3'
miRNA:   3'- aCGUUU-------------UUCGGCUGCUa--------------GGgCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 68425 0.67 0.971614
Target:  5'- cGCucgucGGCC-AUGAUCCCGCuGACu -3'
miRNA:   3'- aCGuuuu-UCGGcUGCUAGGGCG-CUGu -5'
7662 3' -52.6 NC_001973.1 + 55246 0.67 0.971614
Target:  5'- gGCGAGAGGCCuGC--UCUCGaCGACAc -3'
miRNA:   3'- aCGUUUUUCGGcUGcuAGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 70526 0.67 0.971326
Target:  5'- uUGCuuGAucguGCUGACGAaacggccUCCCGUGAg- -3'
miRNA:   3'- -ACGuuUUu---CGGCUGCU-------AGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 94045 0.67 0.968636
Target:  5'- cUGCuGAgcGCgGACGAUUgCGUGGCGc -3'
miRNA:   3'- -ACGuUUuuCGgCUGCUAGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 87391 0.67 0.968636
Target:  5'- cGCAGGAA-CUGAUGAcgCCGCGAUAg -3'
miRNA:   3'- aCGUUUUUcGGCUGCUagGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 62963 0.67 0.968636
Target:  5'- cGCGAGcccGCCGGCGAUCagCGCGu-- -3'
miRNA:   3'- aCGUUUuu-CGGCUGCUAGg-GCGCugu -5'
7662 3' -52.6 NC_001973.1 + 89027 0.68 0.946042
Target:  5'- gGCcuAAAGUaggaGGCGAUCUCGCGcCAc -3'
miRNA:   3'- aCGuuUUUCGg---CUGCUAGGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 8632 0.68 0.946042
Target:  5'- cGCc-GAGGCCGACGAgaaacgCCaaCGUGACGc -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa-----GG--GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 117939 0.68 0.946042
Target:  5'- cGCGGcAAGCgCGACGGg--CGCGACAu -3'
miRNA:   3'- aCGUUuUUCG-GCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 7443 0.68 0.950395
Target:  5'- cGCAcguGAGCuCGGCGGUgCggCGCGACGa -3'
miRNA:   3'- aCGUuu-UUCG-GCUGCUAgG--GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 43975 0.68 0.950395
Target:  5'- gGCGGccucucuGCCGGCGAUCCaGCG-CAg -3'
miRNA:   3'- aCGUUuuu----CGGCUGCUAGGgCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 21630 0.68 0.954508
Target:  5'- gUGCAcguGGAAGCCGugcaGG-CCgCGCGGCAg -3'
miRNA:   3'- -ACGU---UUUUCGGCug--CUaGG-GCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 79991 0.68 0.954508
Target:  5'- gGCAGAAAGUCGACG--CCCGgGuuGg -3'
miRNA:   3'- aCGUUUUUCGGCUGCuaGGGCgCugU- -5'
7662 3' -52.6 NC_001973.1 + 96339 0.68 0.954508
Target:  5'- gUGCAGAAAca-GGCGAUCgCGCGAUc -3'
miRNA:   3'- -ACGUUUUUcggCUGCUAGgGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 14379 0.68 0.946042
Target:  5'- cGCGGcGAGGCCGGacaGuagCCCGCGAaCAg -3'
miRNA:   3'- aCGUU-UUUCGGCUg--Cua-GGGCGCU-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.