Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7662 | 3' | -52.6 | NC_001973.1 | + | 52181 | 0.71 | 0.834911 |
Target: 5'- gGCGAcGAGCgCGGCGGggUCgCGCGACu -3' miRNA: 3'- aCGUUuUUCG-GCUGCU--AGgGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 24545 | 0.72 | 0.781067 |
Target: 5'- gGCGAGAAgcucGCCGACGAguUCCUG-GGCAa -3' miRNA: 3'- aCGUUUUU----CGGCUGCU--AGGGCgCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 158588 | 0.72 | 0.781067 |
Target: 5'- --aAAAAAGCuCGGCGGUCCCGCcGCc -3' miRNA: 3'- acgUUUUUCG-GCUGCUAGGGCGcUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 8775 | 0.72 | 0.790443 |
Target: 5'- cUGCAAcaGAGGCCGagcgucaacGCGAcggaaCCCGCGGCGc -3' miRNA: 3'- -ACGUU--UUUCGGC---------UGCUa----GGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 33385 | 0.72 | 0.817642 |
Target: 5'- cGUucGAGGCCGACGAcgcgUCCGCG-CAa -3' miRNA: 3'- aCGuuUUUCGGCUGCUa---GGGCGCuGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 53328 | 0.73 | 0.761907 |
Target: 5'- cUGCAGGgcGUCGAUGcgCCCGCGcCGg -3' miRNA: 3'- -ACGUUUuuCGGCUGCuaGGGCGCuGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 131484 | 0.73 | 0.752142 |
Target: 5'- aGguGGAGGUCGGCGggCCCGCcGCGc -3' miRNA: 3'- aCguUUUUCGGCUGCuaGGGCGcUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 8597 | 0.73 | 0.752142 |
Target: 5'- cGCgAGAAAGCCGGCGGccgCgCCGCgGACGa -3' miRNA: 3'- aCG-UUUUUCGGCUGCUa--G-GGCG-CUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 28692 | 0.73 | 0.732291 |
Target: 5'- gGCGAAguguccguccAGGUCGGCGAUgagCCGCGACAg -3' miRNA: 3'- aCGUUU----------UUCGGCUGCUAg--GGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 15396 | 0.74 | 0.691582 |
Target: 5'- aGCGGGGAGgCGACGuucaAUUCCGCGAUg -3' miRNA: 3'- aCGUUUUUCgGCUGC----UAGGGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 31466 | 0.74 | 0.691582 |
Target: 5'- cGCccgacucGAAGCCGACGGUCUgcgCGCGAUAg -3' miRNA: 3'- aCGuu-----UUUCGGCUGCUAGG---GCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 8499 | 0.74 | 0.701861 |
Target: 5'- cGCGAAuggaacucGAGCCggGACGAUUgCGCGACGc -3' miRNA: 3'- aCGUUU--------UUCGG--CUGCUAGgGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 158669 | 0.77 | 0.516035 |
Target: 5'- gGCAAGAAGuCCGGCGAagCCgGCGGCc -3' miRNA: 3'- aCGUUUUUC-GGCUGCUa-GGgCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 6517 | 0.78 | 0.496242 |
Target: 5'- cGCGGGcguGCCGACGAUUuuGCGGCu -3' miRNA: 3'- aCGUUUuu-CGGCUGCUAGggCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 140337 | 1.09 | 0.006477 |
Target: 5'- uUGCAAAAAGCCGACGAUCCCGCGACAc -3' miRNA: 3'- -ACGUUUUUCGGCUGCUAGGGCGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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