miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 121632 0.66 0.979094
Target:  5'- uUGCAGuuuuuGGCCGACGcgCgCCGCcucgaagGGCGc -3'
miRNA:   3'- -ACGUUuu---UCGGCUGCuaG-GGCG-------CUGU- -5'
7662 3' -52.6 NC_001973.1 + 27920 0.66 0.979323
Target:  5'- aGCAcgcGAGCCGGCGA-CCCGacaccGCAc -3'
miRNA:   3'- aCGUuu-UUCGGCUGCUaGGGCgc---UGU- -5'
7662 3' -52.6 NC_001973.1 + 137324 0.66 0.981509
Target:  5'- gGCG---GGCgGGCGcgCgCGCGACGa -3'
miRNA:   3'- aCGUuuuUCGgCUGCuaGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 140737 0.66 0.981509
Target:  5'- cGCAAGuuuAGGCUGGCGcuguaCCGCGAg- -3'
miRNA:   3'- aCGUUU---UUCGGCUGCuag--GGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 5949 0.66 0.981509
Target:  5'- cGCGAcgcGGCCGGCGGa--UGCGACGu -3'
miRNA:   3'- aCGUUuu-UCGGCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 70109 0.66 0.981509
Target:  5'- cGCGAAc-GCCu-CGGcgCCCGCGGCGa -3'
miRNA:   3'- aCGUUUuuCGGcuGCUa-GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 133286 0.66 0.981509
Target:  5'- gGcCGAGAacgcGGCCGGCGGcggcgccgUCgCGCGGCGa -3'
miRNA:   3'- aC-GUUUU----UCGGCUGCU--------AGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 11160 0.66 0.982334
Target:  5'- gGCGuuGGGCaCGuacucggacuugaacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 5491 0.66 0.983518
Target:  5'- gGUAGAAGGCuCGAuCGccgCCCGCG-CGg -3'
miRNA:   3'- aCGUUUUUCG-GCU-GCua-GGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 121318 0.66 0.981509
Target:  5'- gGCGGAcgcGCCGACGAgcUCaCCGacaGGCGg -3'
miRNA:   3'- aCGUUUuu-CGGCUGCU--AG-GGCg--CUGU- -5'
7662 3' -52.6 NC_001973.1 + 124080 0.66 0.97695
Target:  5'- gUGCAAuu--UCGACGcgCgCCGCGGCGa -3'
miRNA:   3'- -ACGUUuuucGGCUGCuaG-GGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 112512 0.66 0.974383
Target:  5'- aGCuuGAGGCCGcuggaaugaACGGUCCUGCu-CAg -3'
miRNA:   3'- aCGuuUUUCGGC---------UGCUAGGGCGcuGU- -5'
7662 3' -52.6 NC_001973.1 + 142406 0.66 0.974383
Target:  5'- cGUGGAGAGCCggcaGACGAUCgUGCccGGCGa -3'
miRNA:   3'- aCGUUUUUCGG----CUGCUAGgGCG--CUGU- -5'
7662 3' -52.6 NC_001973.1 + 157902 0.66 0.974383
Target:  5'- cGC----GGCCGcCGcgCCCGCGAg- -3'
miRNA:   3'- aCGuuuuUCGGCuGCuaGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 128007 0.66 0.975434
Target:  5'- cGCGuuGGGCaCGuacucggacuuguacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 71781 0.66 0.97695
Target:  5'- aGCucGAGGCCGGCGGcgccCCCGUcGCc -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa---GGGCGcUGu -5'
7662 3' -52.6 NC_001973.1 + 16934 0.66 0.97695
Target:  5'- aGCAAAAAGaagGGCGuUUCCGCGAa- -3'
miRNA:   3'- aCGUUUUUCgg-CUGCuAGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 28953 0.66 0.97695
Target:  5'- gGCAGcgGGGGCCGGCaGUCggGCGGCGa -3'
miRNA:   3'- aCGUU--UUUCGGCUGcUAGggCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 55667 0.66 0.97695
Target:  5'- aGCc-GAGGCCGGCGGugaaucgcgUCCCGUcGCGc -3'
miRNA:   3'- aCGuuUUUCGGCUGCU---------AGGGCGcUGU- -5'
7662 3' -52.6 NC_001973.1 + 82773 0.66 0.97695
Target:  5'- cUGCAGGucGCCGAguUGGUCCuCGaGGCGc -3'
miRNA:   3'- -ACGUUUuuCGGCU--GCUAGG-GCgCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.