Results 81 - 95 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7662 | 3' | -52.6 | NC_001973.1 | + | 121318 | 0.66 | 0.981509 |
Target: 5'- gGCGGAcgcGCCGACGAgcUCaCCGacaGGCGg -3' miRNA: 3'- aCGUUUuu-CGGCUGCU--AG-GGCg--CUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 135662 | 0.66 | 0.981509 |
Target: 5'- aUGCAGGuguuGGCCGugGcgcuggCCUGCGGu- -3' miRNA: 3'- -ACGUUUu---UCGGCugCua----GGGCGCUgu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 133286 | 0.66 | 0.981509 |
Target: 5'- gGcCGAGAacgcGGCCGGCGGcggcgccgUCgCGCGGCGa -3' miRNA: 3'- aC-GUUUU----UCGGCUGCU--------AGgGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 70109 | 0.66 | 0.981509 |
Target: 5'- cGCGAAc-GCCu-CGGcgCCCGCGGCGa -3' miRNA: 3'- aCGUUUuuCGGcuGCUa-GGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 5949 | 0.66 | 0.981509 |
Target: 5'- cGCGAcgcGGCCGGCGGa--UGCGACGu -3' miRNA: 3'- aCGUUuu-UCGGCUGCUaggGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 140737 | 0.66 | 0.981509 |
Target: 5'- cGCAAGuuuAGGCUGGCGcuguaCCGCGAg- -3' miRNA: 3'- aCGUUU---UUCGGCUGCuag--GGCGCUgu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 137324 | 0.66 | 0.981509 |
Target: 5'- gGCG---GGCgGGCGcgCgCGCGACGa -3' miRNA: 3'- aCGUuuuUCGgCUGCuaGgGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 1709 | 0.66 | 0.982334 |
Target: 5'- gGCGuuGGGCaCGuacucgcguuugaacACGAUCUCGCGAUu -3' miRNA: 3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 11160 | 0.66 | 0.982334 |
Target: 5'- gGCGuuGGGCaCGuacucggacuugaacACGAUCUCGCGAUu -3' miRNA: 3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 119540 | 0.66 | 0.983518 |
Target: 5'- cGCAAAGAGCCucccgucuacGACauGAUCa-GCGACGu -3' miRNA: 3'- aCGUUUUUCGG----------CUG--CUAGggCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 109857 | 0.66 | 0.983518 |
Target: 5'- cGCcgcc-GCCGACGAggaCGCGGCGc -3' miRNA: 3'- aCGuuuuuCGGCUGCUaggGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 32543 | 0.66 | 0.983518 |
Target: 5'- cGCG---AGCuCGGCGAUCgCCGCcgccGACGc -3' miRNA: 3'- aCGUuuuUCG-GCUGCUAG-GGCG----CUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 5491 | 0.66 | 0.983518 |
Target: 5'- gGUAGAAGGCuCGAuCGccgCCCGCG-CGg -3' miRNA: 3'- aCGUUUUUCG-GCU-GCua-GGGCGCuGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 7924 | 0.65 | 0.985002 |
Target: 5'- gGCGGAGcgcgugugcgcGGCCGGCGuggugcacgcgCCCGCGuGCGc -3' miRNA: 3'- aCGUUUU-----------UCGGCUGCua---------GGGCGC-UGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 121362 | 0.65 | 0.985002 |
Target: 5'- cGCGAccucgaccaucuGGGCCGACGcgCCCGUcACc -3' miRNA: 3'- aCGUUu-----------UUCGGCUGCuaGGGCGcUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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