miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 55667 0.66 0.97695
Target:  5'- aGCc-GAGGCCGGCGGugaaucgcgUCCCGUcGCGc -3'
miRNA:   3'- aCGuuUUUCGGCUGCU---------AGGGCGcUGU- -5'
7662 3' -52.6 NC_001973.1 + 59007 0.71 0.859355
Target:  5'- gGCGAGcggcGCCGACGuguucuuuUCCgGCGACGg -3'
miRNA:   3'- aCGUUUuu--CGGCUGCu-------AGGgCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 59480 0.66 0.974383
Target:  5'- aGCAGAAcGUCGGCGGuggccaagagcaUCCuCGcCGACAu -3'
miRNA:   3'- aCGUUUUuCGGCUGCU------------AGG-GC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 62963 0.67 0.968636
Target:  5'- cGCGAGcccGCCGGCGAUCagCGCGu-- -3'
miRNA:   3'- aCGUUUuu-CGGCUGCUAGg-GCGCugu -5'
7662 3' -52.6 NC_001973.1 + 68425 0.67 0.971614
Target:  5'- cGCucgucGGCC-AUGAUCCCGCuGACu -3'
miRNA:   3'- aCGuuuu-UCGGcUGCUAGGGCG-CUGu -5'
7662 3' -52.6 NC_001973.1 + 70109 0.66 0.981509
Target:  5'- cGCGAAc-GCCu-CGGcgCCCGCGGCGa -3'
miRNA:   3'- aCGUUUuuCGGcuGCUa-GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 70449 0.69 0.931508
Target:  5'- cGCucGGAGCUcacGCGAUCCaccaGCGGCAu -3'
miRNA:   3'- aCGuuUUUCGGc--UGCUAGGg---CGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 70526 0.67 0.971326
Target:  5'- uUGCuuGAucguGCUGACGAaacggccUCCCGUGAg- -3'
miRNA:   3'- -ACGuuUUu---CGGCUGCU-------AGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 71781 0.66 0.97695
Target:  5'- aGCucGAGGCCGGCGGcgccCCCGUcGCc -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa---GGGCGcUGu -5'
7662 3' -52.6 NC_001973.1 + 72821 0.66 0.979323
Target:  5'- aUGUugacGAGGCCGGCGGcCgCCGCG-CAg -3'
miRNA:   3'- -ACGuu--UUUCGGCUGCUaG-GGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 79077 0.7 0.867084
Target:  5'- aGCu-GGAGCgCGACGAcaagUUUCGCGACAa -3'
miRNA:   3'- aCGuuUUUCG-GCUGCU----AGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 79991 0.68 0.954508
Target:  5'- gGCAGAAAGUCGACG--CCCGgGuuGg -3'
miRNA:   3'- aCGUUUUUCGGCUGCuaGGGCgCugU- -5'
7662 3' -52.6 NC_001973.1 + 80452 0.67 0.965443
Target:  5'- cGCGGucuGgCGGCGGUCCgGCGcCAg -3'
miRNA:   3'- aCGUUuuuCgGCUGCUAGGgCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 82773 0.66 0.97695
Target:  5'- cUGCAGGucGCCGAguUGGUCCuCGaGGCGc -3'
miRNA:   3'- -ACGUUUuuCGGCU--GCUAGG-GCgCUGU- -5'
7662 3' -52.6 NC_001973.1 + 84628 0.7 0.874592
Target:  5'- gUGCAAAAauacgaacugcuGGCCcgGGCGGUgaCUCGCGACAa -3'
miRNA:   3'- -ACGUUUU------------UCGG--CUGCUA--GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 85635 0.69 0.914737
Target:  5'- cGCAGucuaucaucuuGAAGCCGGCGAUCagCCG-GACc -3'
miRNA:   3'- aCGUU-----------UUUCGGCUGCUAG--GGCgCUGu -5'
7662 3' -52.6 NC_001973.1 + 86951 0.71 0.862472
Target:  5'- cGuCGucAAGCCGACGGcgccguccgccccgCCCGCGGCGc -3'
miRNA:   3'- aC-GUuuUUCGGCUGCUa-------------GGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 87391 0.67 0.968636
Target:  5'- cGCAGGAA-CUGAUGAcgCCGCGAUAg -3'
miRNA:   3'- aCGUUUUUcGGCUGCUagGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 89027 0.68 0.946042
Target:  5'- gGCcuAAAGUaggaGGCGAUCUCGCGcCAc -3'
miRNA:   3'- aCGuuUUUCGg---CUGCUAGGGCGCuGU- -5'
7662 3' -52.6 NC_001973.1 + 93711 0.71 0.859355
Target:  5'- aGCAAGAcaaGGCCG-CGAagcgcuaCCGCGACGa -3'
miRNA:   3'- aCGUUUU---UCGGCuGCUag-----GGCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.