miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 94045 0.67 0.968636
Target:  5'- cUGCuGAgcGCgGACGAUUgCGUGGCGc -3'
miRNA:   3'- -ACGuUUuuCGgCUGCUAGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 94146 0.67 0.971614
Target:  5'- cGCGGAccuggcgccguccGAGCCGAUGAagacccauuguaacgCCgGCGACGu -3'
miRNA:   3'- aCGUUU-------------UUCGGCUGCUa--------------GGgCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 94952 0.66 0.974383
Target:  5'- gGCGuguacGGGCgCGACuuUCCCGcCGACAa -3'
miRNA:   3'- aCGUuu---UUCG-GCUGcuAGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 96339 0.68 0.954508
Target:  5'- gUGCAGAAAca-GGCGAUCgCGCGAUc -3'
miRNA:   3'- -ACGUUUUUcggCUGCUAGgGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 104000 0.67 0.968636
Target:  5'- aGCAGccuagccGGGCCGuCGA-CUCGCGGCGc -3'
miRNA:   3'- aCGUUu------UUCGGCuGCUaGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 109857 0.66 0.983518
Target:  5'- cGCcgcc-GCCGACGAggaCGCGGCGc -3'
miRNA:   3'- aCGuuuuuCGGCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 112512 0.66 0.974383
Target:  5'- aGCuuGAGGCCGcuggaaugaACGGUCCUGCu-CAg -3'
miRNA:   3'- aCGuuUUUCGGC---------UGCUAGGGCGcuGU- -5'
7662 3' -52.6 NC_001973.1 + 117420 0.68 0.954508
Target:  5'- cGU----GGCCGACGAUUgcaUCGCGACc -3'
miRNA:   3'- aCGuuuuUCGGCUGCUAG---GGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 117939 0.68 0.946042
Target:  5'- cGCGGcAAGCgCGACGGg--CGCGACAu -3'
miRNA:   3'- aCGUUuUUCG-GCUGCUaggGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 119402 0.7 0.881875
Target:  5'- gUGCAAAcgggcGUCGACGcGUUUCGCGACAu -3'
miRNA:   3'- -ACGUUUuu---CGGCUGC-UAGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 119540 0.66 0.983518
Target:  5'- cGCAAAGAGCCucccgucuacGACauGAUCa-GCGACGu -3'
miRNA:   3'- aCGUUUUUCGG----------CUG--CUAGggCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 120323 0.66 0.980219
Target:  5'- gUGCGGAGacgacggcgcGGCCGcaucgcgauucaaacGCGAUCUgGCGGCc -3'
miRNA:   3'- -ACGUUUU----------UCGGC---------------UGCUAGGgCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 121283 0.71 0.834911
Target:  5'- cGCGAAAuucgcGGCCGuCG--CCCGCGGCGc -3'
miRNA:   3'- aCGUUUU-----UCGGCuGCuaGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 121318 0.66 0.981509
Target:  5'- gGCGGAcgcGCCGACGAgcUCaCCGacaGGCGg -3'
miRNA:   3'- aCGUUUuu-CGGCUGCU--AG-GGCg--CUGU- -5'
7662 3' -52.6 NC_001973.1 + 121362 0.65 0.985002
Target:  5'- cGCGAccucgaccaucuGGGCCGACGcgCCCGUcACc -3'
miRNA:   3'- aCGUUu-----------UUCGGCUGCuaGGGCGcUGu -5'
7662 3' -52.6 NC_001973.1 + 121632 0.66 0.979094
Target:  5'- uUGCAGuuuuuGGCCGACGcgCgCCGCcucgaagGGCGc -3'
miRNA:   3'- -ACGUUuu---UCGGCUGCuaG-GGCG-------CUGU- -5'
7662 3' -52.6 NC_001973.1 + 124080 0.66 0.97695
Target:  5'- gUGCAAuu--UCGACGcgCgCCGCGGCGa -3'
miRNA:   3'- -ACGUUuuucGGCUGCuaG-GGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 128007 0.66 0.975434
Target:  5'- cGCGuuGGGCaCGuacucggacuuguacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 131484 0.73 0.752142
Target:  5'- aGguGGAGGUCGGCGggCCCGCcGCGc -3'
miRNA:   3'- aCguUUUUCGGCUGCuaGGGCGcUGU- -5'
7662 3' -52.6 NC_001973.1 + 131797 0.67 0.962027
Target:  5'- gGUgAAGGGGCCGuCGAcgCCCaaGCGACAc -3'
miRNA:   3'- aCG-UUUUUCGGCuGCUa-GGG--CGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.