miRNA display CGI


Results 81 - 95 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 133286 0.66 0.981509
Target:  5'- gGcCGAGAacgcGGCCGGCGGcggcgccgUCgCGCGGCGa -3'
miRNA:   3'- aC-GUUUU----UCGGCUGCU--------AGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 134795 0.69 0.931508
Target:  5'- aUGCGGcc-GUCGGCGugGUgCCGCGACAg -3'
miRNA:   3'- -ACGUUuuuCGGCUGC--UAgGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 135662 0.66 0.981509
Target:  5'- aUGCAGGuguuGGCCGugGcgcuggCCUGCGGu- -3'
miRNA:   3'- -ACGUUUu---UCGGCugCua----GGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 136465 0.66 0.979323
Target:  5'- cGCGAAguAGGCC-ACGuagCCgGCGGCGu -3'
miRNA:   3'- aCGUUU--UUCGGcUGCua-GGgCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 137206 0.67 0.962027
Target:  5'- cGCGAGucGCgCGGCGGcgcgUCCGCaGACAu -3'
miRNA:   3'- aCGUUUuuCG-GCUGCUa---GGGCG-CUGU- -5'
7662 3' -52.6 NC_001973.1 + 137324 0.66 0.981509
Target:  5'- gGCG---GGCgGGCGcgCgCGCGACGa -3'
miRNA:   3'- aCGUuuuUCGgCUGCuaGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 140194 0.67 0.965443
Target:  5'- aGCAAuucuuGAAGCCGaACGuGUgCUGCGGCu -3'
miRNA:   3'- aCGUU-----UUUCGGC-UGC-UAgGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 140337 1.09 0.006477
Target:  5'- uUGCAAAAAGCCGACGAUCCCGCGACAc -3'
miRNA:   3'- -ACGUUUUUCGGCUGCUAGGGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 140737 0.66 0.981509
Target:  5'- cGCAAGuuuAGGCUGGCGcuguaCCGCGAg- -3'
miRNA:   3'- aCGUUU---UUCGGCUGCuag--GGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 142406 0.66 0.974383
Target:  5'- cGUGGAGAGCCggcaGACGAUCgUGCccGGCGa -3'
miRNA:   3'- aCGUUUUUCGG----CUGCUAGgGCG--CUGU- -5'
7662 3' -52.6 NC_001973.1 + 144382 0.66 0.979323
Target:  5'- cGCcgcc-GCCGACcauggaGAUCgCGCGACAg -3'
miRNA:   3'- aCGuuuuuCGGCUG------CUAGgGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 157902 0.66 0.974383
Target:  5'- cGC----GGCCGcCGcgCCCGCGAg- -3'
miRNA:   3'- aCGuuuuUCGGCuGCuaGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 158588 0.72 0.781067
Target:  5'- --aAAAAAGCuCGGCGGUCCCGCcGCc -3'
miRNA:   3'- acgUUUUUCG-GCUGCUAGGGCGcUGu -5'
7662 3' -52.6 NC_001973.1 + 158669 0.77 0.516035
Target:  5'- gGCAAGAAGuCCGGCGAagCCgGCGGCc -3'
miRNA:   3'- aCGUUUUUC-GGCUGCUa-GGgCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 158936 0.69 0.926167
Target:  5'- cGCGAccGAGCCGccCGcgUCCGCGACc -3'
miRNA:   3'- aCGUUu-UUCGGCu-GCuaGGGCGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.