Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7662 | 3' | -52.6 | NC_001973.1 | + | 121362 | 0.65 | 0.985002 |
Target: 5'- cGCGAccucgaccaucuGGGCCGACGcgCCCGUcACc -3' miRNA: 3'- aCGUUu-----------UUCGGCUGCuaGGGCGcUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 121318 | 0.66 | 0.981509 |
Target: 5'- gGCGGAcgcGCCGACGAgcUCaCCGacaGGCGg -3' miRNA: 3'- aCGUUUuu-CGGCUGCU--AG-GGCg--CUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 121283 | 0.71 | 0.834911 |
Target: 5'- cGCGAAAuucgcGGCCGuCG--CCCGCGGCGc -3' miRNA: 3'- aCGUUUU-----UCGGCuGCuaGGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 120323 | 0.66 | 0.980219 |
Target: 5'- gUGCGGAGacgacggcgcGGCCGcaucgcgauucaaacGCGAUCUgGCGGCc -3' miRNA: 3'- -ACGUUUU----------UCGGC---------------UGCUAGGgCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 119540 | 0.66 | 0.983518 |
Target: 5'- cGCAAAGAGCCucccgucuacGACauGAUCa-GCGACGu -3' miRNA: 3'- aCGUUUUUCGG----------CUG--CUAGggCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 119402 | 0.7 | 0.881875 |
Target: 5'- gUGCAAAcgggcGUCGACGcGUUUCGCGACAu -3' miRNA: 3'- -ACGUUUuu---CGGCUGC-UAGGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 117939 | 0.68 | 0.946042 |
Target: 5'- cGCGGcAAGCgCGACGGg--CGCGACAu -3' miRNA: 3'- aCGUUuUUCG-GCUGCUaggGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 117420 | 0.68 | 0.954508 |
Target: 5'- cGU----GGCCGACGAUUgcaUCGCGACc -3' miRNA: 3'- aCGuuuuUCGGCUGCUAG---GGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 112512 | 0.66 | 0.974383 |
Target: 5'- aGCuuGAGGCCGcuggaaugaACGGUCCUGCu-CAg -3' miRNA: 3'- aCGuuUUUCGGC---------UGCUAGGGCGcuGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 109857 | 0.66 | 0.983518 |
Target: 5'- cGCcgcc-GCCGACGAggaCGCGGCGc -3' miRNA: 3'- aCGuuuuuCGGCUGCUaggGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 104000 | 0.67 | 0.968636 |
Target: 5'- aGCAGccuagccGGGCCGuCGA-CUCGCGGCGc -3' miRNA: 3'- aCGUUu------UUCGGCuGCUaGGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 96339 | 0.68 | 0.954508 |
Target: 5'- gUGCAGAAAca-GGCGAUCgCGCGAUc -3' miRNA: 3'- -ACGUUUUUcggCUGCUAGgGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 94952 | 0.66 | 0.974383 |
Target: 5'- gGCGuguacGGGCgCGACuuUCCCGcCGACAa -3' miRNA: 3'- aCGUuu---UUCG-GCUGcuAGGGC-GCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 94146 | 0.67 | 0.971614 |
Target: 5'- cGCGGAccuggcgccguccGAGCCGAUGAagacccauuguaacgCCgGCGACGu -3' miRNA: 3'- aCGUUU-------------UUCGGCUGCUa--------------GGgCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 94045 | 0.67 | 0.968636 |
Target: 5'- cUGCuGAgcGCgGACGAUUgCGUGGCGc -3' miRNA: 3'- -ACGuUUuuCGgCUGCUAGgGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 93711 | 0.71 | 0.859355 |
Target: 5'- aGCAAGAcaaGGCCG-CGAagcgcuaCCGCGACGa -3' miRNA: 3'- aCGUUUU---UCGGCuGCUag-----GGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 89027 | 0.68 | 0.946042 |
Target: 5'- gGCcuAAAGUaggaGGCGAUCUCGCGcCAc -3' miRNA: 3'- aCGuuUUUCGg---CUGCUAGGGCGCuGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 87391 | 0.67 | 0.968636 |
Target: 5'- cGCAGGAA-CUGAUGAcgCCGCGAUAg -3' miRNA: 3'- aCGUUUUUcGGCUGCUagGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 86951 | 0.71 | 0.862472 |
Target: 5'- cGuCGucAAGCCGACGGcgccguccgccccgCCCGCGGCGc -3' miRNA: 3'- aC-GUuuUUCGGCUGCUa-------------GGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 85635 | 0.69 | 0.914737 |
Target: 5'- cGCAGucuaucaucuuGAAGCCGGCGAUCagCCG-GACc -3' miRNA: 3'- aCGUU-----------UUUCGGCUGCUAG--GGCgCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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