Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7662 | 3' | -52.6 | NC_001973.1 | + | 39755 | 0.69 | 0.914737 |
Target: 5'- gGCGAGgcccGAGCCGAagcugacguacaCGAcUCCGCGGCGc -3' miRNA: 3'- aCGUUU----UUCGGCU------------GCUaGGGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 38959 | 0.7 | 0.887535 |
Target: 5'- cGCgAAGAGGCCGGCGAgcguuuauaaaCCGaCGGCGg -3' miRNA: 3'- aCG-UUUUUCGGCUGCUag---------GGC-GCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 36770 | 0.66 | 0.974383 |
Target: 5'- aGCGAGAGGCgcgCGACGcgCUCGCa--- -3' miRNA: 3'- aCGUUUUUCG---GCUGCuaGGGCGcugu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 35197 | 0.69 | 0.914737 |
Target: 5'- cGCGAucaacGCCGACG-UCaCCGcCGACAu -3' miRNA: 3'- aCGUUuuu--CGGCUGCuAG-GGC-GCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 33385 | 0.72 | 0.817642 |
Target: 5'- cGUucGAGGCCGACGAcgcgUCCGCG-CAa -3' miRNA: 3'- aCGuuUUUCGGCUGCUa---GGGCGCuGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 32543 | 0.66 | 0.983518 |
Target: 5'- cGCG---AGCuCGGCGAUCgCCGCcgccGACGc -3' miRNA: 3'- aCGUuuuUCG-GCUGCUAG-GGCG----CUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 31466 | 0.74 | 0.691582 |
Target: 5'- cGCccgacucGAAGCCGACGGUCUgcgCGCGAUAg -3' miRNA: 3'- aCGuu-----UUUCGGCUGCUAGG---GCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 30422 | 0.68 | 0.941444 |
Target: 5'- cGCGAAcuGCCGACGG-CacaCGgGACAc -3' miRNA: 3'- aCGUUUuuCGGCUGCUaGg--GCgCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 28953 | 0.66 | 0.97695 |
Target: 5'- gGCAGcgGGGGCCGGCaGUCggGCGGCGa -3' miRNA: 3'- aCGUU--UUUCGGCUGcUAGggCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 28692 | 0.73 | 0.732291 |
Target: 5'- gGCGAAguguccguccAGGUCGGCGAUgagCCGCGACAg -3' miRNA: 3'- aCGUUU----------UUCGGCUGCUAg--GGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 27920 | 0.66 | 0.979323 |
Target: 5'- aGCAcgcGAGCCGGCGA-CCCGacaccGCAc -3' miRNA: 3'- aCGUuu-UUCGGCUGCUaGGGCgc---UGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 24545 | 0.72 | 0.781067 |
Target: 5'- gGCGAGAAgcucGCCGACGAguUCCUG-GGCAa -3' miRNA: 3'- aCGUUUUU----CGGCUGCU--AGGGCgCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 23722 | 0.67 | 0.965443 |
Target: 5'- cGCugggcucGCUGACGggCCCGaCGGCGa -3' miRNA: 3'- aCGuuuuu--CGGCUGCuaGGGC-GCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 23565 | 0.7 | 0.867084 |
Target: 5'- cGCAGccGGCCGGCGGacgcgccgCCCGCGcuGCGc -3' miRNA: 3'- aCGUUuuUCGGCUGCUa-------GGGCGC--UGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 21630 | 0.68 | 0.954508 |
Target: 5'- gUGCAcguGGAAGCCGugcaGG-CCgCGCGGCAg -3' miRNA: 3'- -ACGU---UUUUCGGCug--CUaGG-GCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 18373 | 0.67 | 0.965443 |
Target: 5'- cGCAAAAcucGGCCGGCG-UUUCGcCGGCc -3' miRNA: 3'- aCGUUUU---UCGGCUGCuAGGGC-GCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 16934 | 0.66 | 0.97695 |
Target: 5'- aGCAAAAAGaagGGCGuUUCCGCGAa- -3' miRNA: 3'- aCGUUUUUCgg-CUGCuAGGGCGCUgu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 15396 | 0.74 | 0.691582 |
Target: 5'- aGCGGGGAGgCGACGuucaAUUCCGCGAUg -3' miRNA: 3'- aCGUUUUUCgGCUGC----UAGGGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 14379 | 0.68 | 0.946042 |
Target: 5'- cGCGGcGAGGCCGGacaGuagCCCGCGAaCAg -3' miRNA: 3'- aCGUU-UUUCGGCUg--Cua-GGGCGCU-GU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 12075 | 0.67 | 0.962027 |
Target: 5'- uUGCc---GGaCGACGGUCCCGaUGACAu -3' miRNA: 3'- -ACGuuuuUCgGCUGCUAGGGC-GCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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