Results 41 - 60 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7662 | 3' | -52.6 | NC_001973.1 | + | 5491 | 0.66 | 0.983518 |
Target: 5'- gGUAGAAGGCuCGAuCGccgCCCGCG-CGg -3' miRNA: 3'- aCGUUUUUCG-GCU-GCua-GGGCGCuGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 32543 | 0.66 | 0.983518 |
Target: 5'- cGCG---AGCuCGGCGAUCgCCGCcgccGACGc -3' miRNA: 3'- aCGUuuuUCG-GCUGCUAG-GGCG----CUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 109857 | 0.66 | 0.983518 |
Target: 5'- cGCcgcc-GCCGACGAggaCGCGGCGc -3' miRNA: 3'- aCGuuuuuCGGCUGCUaggGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 119540 | 0.66 | 0.983518 |
Target: 5'- cGCAAAGAGCCucccgucuacGACauGAUCa-GCGACGu -3' miRNA: 3'- aCGUUUUUCGG----------CUG--CUAGggCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 7924 | 0.65 | 0.985002 |
Target: 5'- gGCGGAGcgcgugugcgcGGCCGGCGuggugcacgcgCCCGCGuGCGc -3' miRNA: 3'- aCGUUUU-----------UCGGCUGCua---------GGGCGC-UGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 137324 | 0.66 | 0.981509 |
Target: 5'- gGCG---GGCgGGCGcgCgCGCGACGa -3' miRNA: 3'- aCGUuuuUCGgCUGCuaGgGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 120323 | 0.66 | 0.980219 |
Target: 5'- gUGCGGAGacgacggcgcGGCCGcaucgcgauucaaacGCGAUCUgGCGGCc -3' miRNA: 3'- -ACGUUUU----------UCGGC---------------UGCUAGGgCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 157902 | 0.66 | 0.974383 |
Target: 5'- cGC----GGCCGcCGcgCCCGCGAg- -3' miRNA: 3'- aCGuuuuUCGGCuGCuaGGGCGCUgu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 128007 | 0.66 | 0.975434 |
Target: 5'- cGCGuuGGGCaCGuacucggacuuguacACGAUCUCGCGAUu -3' miRNA: 3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 71781 | 0.66 | 0.97695 |
Target: 5'- aGCucGAGGCCGGCGGcgccCCCGUcGCc -3' miRNA: 3'- aCGuuUUUCGGCUGCUa---GGGCGcUGu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 16934 | 0.66 | 0.97695 |
Target: 5'- aGCAAAAAGaagGGCGuUUCCGCGAa- -3' miRNA: 3'- aCGUUUUUCgg-CUGCuAGGGCGCUgu -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 28953 | 0.66 | 0.97695 |
Target: 5'- gGCAGcgGGGGCCGGCaGUCggGCGGCGa -3' miRNA: 3'- aCGUU--UUUCGGCUGcUAGggCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 55667 | 0.66 | 0.97695 |
Target: 5'- aGCc-GAGGCCGGCGGugaaucgcgUCCCGUcGCGc -3' miRNA: 3'- aCGuuUUUCGGCUGCU---------AGGGCGcUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 82773 | 0.66 | 0.97695 |
Target: 5'- cUGCAGGucGCCGAguUGGUCCuCGaGGCGc -3' miRNA: 3'- -ACGUUUuuCGGCU--GCUAGG-GCgCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 124080 | 0.66 | 0.97695 |
Target: 5'- gUGCAAuu--UCGACGcgCgCCGCGGCGa -3' miRNA: 3'- -ACGUUuuucGGCUGCuaG-GGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 121632 | 0.66 | 0.979094 |
Target: 5'- uUGCAGuuuuuGGCCGACGcgCgCCGCcucgaagGGCGc -3' miRNA: 3'- -ACGUUuu---UCGGCUGCuaG-GGCG-------CUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 27920 | 0.66 | 0.979323 |
Target: 5'- aGCAcgcGAGCCGGCGA-CCCGacaccGCAc -3' miRNA: 3'- aCGUuu-UUCGGCUGCUaGGGCgc---UGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 136465 | 0.66 | 0.979323 |
Target: 5'- cGCGAAguAGGCC-ACGuagCCgGCGGCGu -3' miRNA: 3'- aCGUUU--UUCGGcUGCua-GGgCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 144382 | 0.66 | 0.979323 |
Target: 5'- cGCcgcc-GCCGACcauggaGAUCgCGCGACAg -3' miRNA: 3'- aCGuuuuuCGGCUG------CUAGgGCGCUGU- -5' |
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7662 | 3' | -52.6 | NC_001973.1 | + | 72821 | 0.66 | 0.979323 |
Target: 5'- aUGUugacGAGGCCGGCGGcCgCCGCG-CAg -3' miRNA: 3'- -ACGuu--UUUCGGCUGCUaG-GGCGCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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