miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 3' -52.6 NC_001973.1 + 121632 0.66 0.979094
Target:  5'- uUGCAGuuuuuGGCCGACGcgCgCCGCcucgaagGGCGc -3'
miRNA:   3'- -ACGUUuu---UCGGCUGCuaG-GGCG-------CUGU- -5'
7662 3' -52.6 NC_001973.1 + 124080 0.66 0.97695
Target:  5'- gUGCAAuu--UCGACGcgCgCCGCGGCGa -3'
miRNA:   3'- -ACGUUuuucGGCUGCuaG-GGCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 71781 0.66 0.97695
Target:  5'- aGCucGAGGCCGGCGGcgccCCCGUcGCc -3'
miRNA:   3'- aCGuuUUUCGGCUGCUa---GGGCGcUGu -5'
7662 3' -52.6 NC_001973.1 + 16934 0.66 0.97695
Target:  5'- aGCAAAAAGaagGGCGuUUCCGCGAa- -3'
miRNA:   3'- aCGUUUUUCgg-CUGCuAGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 28953 0.66 0.97695
Target:  5'- gGCAGcgGGGGCCGGCaGUCggGCGGCGa -3'
miRNA:   3'- aCGUU--UUUCGGCUGcUAGggCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 55667 0.66 0.97695
Target:  5'- aGCc-GAGGCCGGCGGugaaucgcgUCCCGUcGCGc -3'
miRNA:   3'- aCGuuUUUCGGCUGCU---------AGGGCGcUGU- -5'
7662 3' -52.6 NC_001973.1 + 82773 0.66 0.97695
Target:  5'- cUGCAGGucGCCGAguUGGUCCuCGaGGCGc -3'
miRNA:   3'- -ACGUUUuuCGGCU--GCUAGG-GCgCUGU- -5'
7662 3' -52.6 NC_001973.1 + 128007 0.66 0.975434
Target:  5'- cGCGuuGGGCaCGuacucggacuuguacACGAUCUCGCGAUu -3'
miRNA:   3'- aCGUuuUUCG-GC---------------UGCUAGGGCGCUGu -5'
7662 3' -52.6 NC_001973.1 + 36770 0.66 0.974383
Target:  5'- aGCGAGAGGCgcgCGACGcgCUCGCa--- -3'
miRNA:   3'- aCGUUUUUCG---GCUGCuaGGGCGcugu -5'
7662 3' -52.6 NC_001973.1 + 2095 0.66 0.974383
Target:  5'- cGCAAuc-GCCGGCGcguacuugCCCGUGcACAg -3'
miRNA:   3'- aCGUUuuuCGGCUGCua------GGGCGC-UGU- -5'
7662 3' -52.6 NC_001973.1 + 59480 0.66 0.974383
Target:  5'- aGCAGAAcGUCGGCGGuggccaagagcaUCCuCGcCGACAu -3'
miRNA:   3'- aCGUUUUuCGGCUGCU------------AGG-GC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 94952 0.66 0.974383
Target:  5'- gGCGuguacGGGCgCGACuuUCCCGcCGACAa -3'
miRNA:   3'- aCGUuu---UUCG-GCUGcuAGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 112512 0.66 0.974383
Target:  5'- aGCuuGAGGCCGcuggaaugaACGGUCCUGCu-CAg -3'
miRNA:   3'- aCGuuUUUCGGC---------UGCUAGGGCGcuGU- -5'
7662 3' -52.6 NC_001973.1 + 142406 0.66 0.974383
Target:  5'- cGUGGAGAGCCggcaGACGAUCgUGCccGGCGa -3'
miRNA:   3'- aCGUUUUUCGG----CUGCUAGgGCG--CUGU- -5'
7662 3' -52.6 NC_001973.1 + 157902 0.66 0.974383
Target:  5'- cGC----GGCCGcCGcgCCCGCGAg- -3'
miRNA:   3'- aCGuuuuUCGGCuGCuaGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 94146 0.67 0.971614
Target:  5'- cGCGGAccuggcgccguccGAGCCGAUGAagacccauuguaacgCCgGCGACGu -3'
miRNA:   3'- aCGUUU-------------UUCGGCUGCUa--------------GGgCGCUGU- -5'
7662 3' -52.6 NC_001973.1 + 68425 0.67 0.971614
Target:  5'- cGCucgucGGCC-AUGAUCCCGCuGACu -3'
miRNA:   3'- aCGuuuu-UCGGcUGCUAGGGCG-CUGu -5'
7662 3' -52.6 NC_001973.1 + 55246 0.67 0.971614
Target:  5'- gGCGAGAGGCCuGC--UCUCGaCGACAc -3'
miRNA:   3'- aCGUUUUUCGGcUGcuAGGGC-GCUGU- -5'
7662 3' -52.6 NC_001973.1 + 70526 0.67 0.971326
Target:  5'- uUGCuuGAucguGCUGACGAaacggccUCCCGUGAg- -3'
miRNA:   3'- -ACGuuUUu---CGGCUGCU-------AGGGCGCUgu -5'
7662 3' -52.6 NC_001973.1 + 87391 0.67 0.968636
Target:  5'- cGCAGGAA-CUGAUGAcgCCGCGAUAg -3'
miRNA:   3'- aCGUUUUUcGGCUGCUagGGCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.