miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 5' -62.6 NC_001973.1 + 3838 0.66 0.646245
Target:  5'- cUCGCCGgCGAuuugGGCcGGCUCgUCGAu -3'
miRNA:   3'- cAGCGGCgGCUcg--CCGaCCGAG-AGCU- -5'
7662 5' -62.6 NC_001973.1 + 8847 0.69 0.474751
Target:  5'- -gCGCUGCUGGcGCGGCgacacgGGCUgUUCGAg -3'
miRNA:   3'- caGCGGCGGCU-CGCCGa-----CCGA-GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 16904 0.69 0.422431
Target:  5'- -gCGCCGgCG-GCGGC-GGCcUCUCGGc -3'
miRNA:   3'- caGCGGCgGCuCGCCGaCCG-AGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 17444 0.73 0.263472
Target:  5'- cGUUGCCGCCGAaCGGC-GGCaugcaCUCGAg -3'
miRNA:   3'- -CAGCGGCGGCUcGCCGaCCGa----GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 18205 0.65 0.653084
Target:  5'- -cCGCCGCCGcguagcuGCGGCcgaacaccgucaggUGGCacgcgcugCUCGAg -3'
miRNA:   3'- caGCGGCGGCu------CGCCG--------------ACCGa-------GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 21695 0.66 0.616905
Target:  5'- -gCGCCGCCGu-CGGCUGGU---CGAa -3'
miRNA:   3'- caGCGGCGGCucGCCGACCGagaGCU- -5'
7662 5' -62.6 NC_001973.1 + 25927 0.71 0.350852
Target:  5'- cUCGCCGCCGcG-GGCgGGCUCgCGGc -3'
miRNA:   3'- cAGCGGCGGCuCgCCGaCCGAGaGCU- -5'
7662 5' -62.6 NC_001973.1 + 32569 0.68 0.530112
Target:  5'- -aCGCCGCCGu-CGGCUcGGCgcgCUgCGAc -3'
miRNA:   3'- caGCGGCGGCucGCCGA-CCGa--GA-GCU- -5'
7662 5' -62.6 NC_001973.1 + 36320 0.69 0.4658
Target:  5'- -cCGCgGCCGAcGCGGCcgacgcgGGC-CUCGGc -3'
miRNA:   3'- caGCGgCGGCU-CGCCGa------CCGaGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 36990 0.68 0.530112
Target:  5'- cUCGCCGCCcaauuccagaGGGCGGC-GaGCUCgUUGAa -3'
miRNA:   3'- cAGCGGCGG----------CUCGCCGaC-CGAG-AGCU- -5'
7662 5' -62.6 NC_001973.1 + 37782 0.74 0.224207
Target:  5'- -gCGCCGCCGcGCGGC--GCUCUCGu -3'
miRNA:   3'- caGCGGCGGCuCGCCGacCGAGAGCu -5'
7662 5' -62.6 NC_001973.1 + 46485 0.67 0.587659
Target:  5'- cGUCGCCGUCGcccgcGCGGaC-GGC-CUCGGc -3'
miRNA:   3'- -CAGCGGCGGCu----CGCC-GaCCGaGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 48103 0.66 0.607138
Target:  5'- cUCGCCGCCGAGCaGCcGGUcaagUUUGu -3'
miRNA:   3'- cAGCGGCGGCUCGcCGaCCGa---GAGCu -5'
7662 5' -62.6 NC_001973.1 + 49127 0.66 0.636465
Target:  5'- -aCGCgGUgGAGCugcaGGCgUGGCUgCUCGAg -3'
miRNA:   3'- caGCGgCGgCUCG----CCG-ACCGA-GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 53869 0.67 0.577961
Target:  5'- -gCGCCGCCGAgcGCGGCggccgUGGCcgcaUCGu -3'
miRNA:   3'- caGCGGCGGCU--CGCCG-----ACCGag--AGCu -5'
7662 5' -62.6 NC_001973.1 + 55234 0.67 0.577961
Target:  5'- -gCGgCGgCGGGCGGCgagaggccuGCUCUCGAc -3'
miRNA:   3'- caGCgGCgGCUCGCCGac-------CGAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 56170 0.68 0.520706
Target:  5'- uGUCGUCGCUGu-CGGC-GGCgcgCUCGAc -3'
miRNA:   3'- -CAGCGGCGGCucGCCGaCCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 61678 0.73 0.245999
Target:  5'- aGUCGCgGCgCGaAGCGGCgucGGCgcgCUCGAg -3'
miRNA:   3'- -CAGCGgCG-GC-UCGCCGa--CCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 71088 0.7 0.381581
Target:  5'- uGUCGCUgGCCGAGCaGCUGGUcacgcacaugaUCUaCGAc -3'
miRNA:   3'- -CAGCGG-CGGCUCGcCGACCG-----------AGA-GCU- -5'
7662 5' -62.6 NC_001973.1 + 71772 0.69 0.436048
Target:  5'- -cCGCCGCCGAGCucgaggccGGC-GGCgcccccgucgccgCUCGAg -3'
miRNA:   3'- caGCGGCGGCUCG--------CCGaCCGa------------GAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.