miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7662 5' -62.6 NC_001973.1 + 36990 0.68 0.530112
Target:  5'- cUCGCCGCCcaauuccagaGGGCGGC-GaGCUCgUUGAa -3'
miRNA:   3'- cAGCGGCGG----------CUCGCCGaC-CGAG-AGCU- -5'
7662 5' -62.6 NC_001973.1 + 124798 0.68 0.530112
Target:  5'- -cCGCCGgCGAG-GGCcggGGC-CUCGAu -3'
miRNA:   3'- caGCGGCgGCUCgCCGa--CCGaGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 56170 0.68 0.520706
Target:  5'- uGUCGUCGCUGu-CGGC-GGCgcgCUCGAc -3'
miRNA:   3'- -CAGCGGCGGCucGCCGaCCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 8847 0.69 0.474751
Target:  5'- -gCGCUGCUGGcGCGGCgacacgGGCUgUUCGAg -3'
miRNA:   3'- caGCGGCGGCU-CGCCGa-----CCGA-GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 109859 0.69 0.473852
Target:  5'- -cCGCCGCCGAcgaggacGCGGCgcgcGGCgUCUaCGGc -3'
miRNA:   3'- caGCGGCGGCU-------CGCCGa---CCG-AGA-GCU- -5'
7662 5' -62.6 NC_001973.1 + 36320 0.69 0.4658
Target:  5'- -cCGCgGCCGAcGCGGCcgacgcgGGC-CUCGGc -3'
miRNA:   3'- caGCGgCGGCU-CGCCGa------CCGaGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 112755 0.69 0.448168
Target:  5'- -aCGgCGaCCGuGCGGCcGGCUCgUCGAc -3'
miRNA:   3'- caGCgGC-GGCuCGCCGaCCGAG-AGCU- -5'
7662 5' -62.6 NC_001973.1 + 109511 0.69 0.439492
Target:  5'- -cCGCCGCCGuucGCcGCuUGGCUCUUGc -3'
miRNA:   3'- caGCGGCGGCu--CGcCG-ACCGAGAGCu -5'
7662 5' -62.6 NC_001973.1 + 71772 0.69 0.436048
Target:  5'- -cCGCCGCCGAGCucgaggccGGC-GGCgcccccgucgccgCUCGAg -3'
miRNA:   3'- caGCGGCGGCUCG--------CCGaCCGa------------GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 16904 0.69 0.422431
Target:  5'- -gCGCCGgCG-GCGGC-GGCcUCUCGGc -3'
miRNA:   3'- caGCGGCgGCuCGCCGaCCG-AGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 88488 0.7 0.405775
Target:  5'- -gUGCCGCCGGcGCGGCgcGGCUC-Ca- -3'
miRNA:   3'- caGCGGCGGCU-CGCCGa-CCGAGaGcu -5'
7662 5' -62.6 NC_001973.1 + 133918 0.7 0.400859
Target:  5'- cGUCGCCGCCGcccuguccaggugguAGCacgcgGGCUgGGCguaCUCGAc -3'
miRNA:   3'- -CAGCGGCGGC---------------UCG-----CCGA-CCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 71088 0.7 0.381581
Target:  5'- uGUCGCUgGCCGAGCaGCUGGUcacgcacaugaUCUaCGAc -3'
miRNA:   3'- -CAGCGG-CGGCUCGcCGACCG-----------AGA-GCU- -5'
7662 5' -62.6 NC_001973.1 + 25927 0.71 0.350852
Target:  5'- cUCGCCGCCGcG-GGCgGGCUCgCGGc -3'
miRNA:   3'- cAGCGGCGGCuCgCCGaCCGAGaGCU- -5'
7662 5' -62.6 NC_001973.1 + 138636 0.71 0.336161
Target:  5'- -gCGCCaGCgCGGGCGGCacgGGCUUUUGGa -3'
miRNA:   3'- caGCGG-CG-GCUCGCCGa--CCGAGAGCU- -5'
7662 5' -62.6 NC_001973.1 + 143161 0.72 0.308141
Target:  5'- aUCGaCGCCGGGCGGCUGcGUggaUCGGa -3'
miRNA:   3'- cAGCgGCGGCUCGCCGAC-CGag-AGCU- -5'
7662 5' -62.6 NC_001973.1 + 17444 0.73 0.263472
Target:  5'- cGUUGCCGCCGAaCGGC-GGCaugcaCUCGAg -3'
miRNA:   3'- -CAGCGGCGGCUcGCCGaCCGa----GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 61678 0.73 0.245999
Target:  5'- aGUCGCgGCgCGaAGCGGCgucGGCgcgCUCGAg -3'
miRNA:   3'- -CAGCGgCG-GC-UCGCCGa--CCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 132536 0.74 0.240391
Target:  5'- --gGCCGCCGGgcGCGGC-GGCgggCUCGAg -3'
miRNA:   3'- cagCGGCGGCU--CGCCGaCCGa--GAGCU- -5'
7662 5' -62.6 NC_001973.1 + 37782 0.74 0.224207
Target:  5'- -gCGCCGCCGcGCGGC--GCUCUCGu -3'
miRNA:   3'- caGCGGCGGCuCGCCGacCGAGAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.