Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7663 | 3' | -55.6 | NC_001973.1 | + | 7400 | 0.68 | 0.844236 |
Target: 5'- cUCGAGgCGCCGaugUGCGuguaccuggucaaGUUCAaGGACu -3' miRNA: 3'- -AGCUCgGCGGCa--ACGC-------------UAAGUgCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 81013 | 0.68 | 0.845037 |
Target: 5'- gUCGAGCacagcuugacCGCCGacgGCGGUaUGCGGGCc -3' miRNA: 3'- -AGCUCG----------GCGGCaa-CGCUAaGUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 109550 | 0.68 | 0.852158 |
Target: 5'- gCGAGCCGCgcgaacgccggcgCGggGCGggUUuCGGGCg -3' miRNA: 3'- aGCUCGGCG-------------GCaaCGCuaAGuGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 124856 | 0.68 | 0.867402 |
Target: 5'- -gGAGCCcuacgagGCCa-UGCGGgacgUCGCGGACg -3' miRNA: 3'- agCUCGG-------CGGcaACGCUa---AGUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 4654 | 0.68 | 0.868143 |
Target: 5'- gCGGG-CGCCGUcgGCGAgu--CGGACa -3' miRNA: 3'- aGCUCgGCGGCAa-CGCUaaguGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 39416 | 0.68 | 0.852939 |
Target: 5'- gUCG-GCCGCgGUgagGCGcgUCGCguccaGGGCg -3' miRNA: 3'- -AGCuCGGCGgCAa--CGCuaAGUG-----CCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 125677 | 0.68 | 0.868143 |
Target: 5'- aCGuGCacgGCgGUUGCGGU-CACGGAa -3' miRNA: 3'- aGCuCGg--CGgCAACGCUAaGUGCCUg -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 118347 | 0.68 | 0.868143 |
Target: 5'- uUCGuGCgCGCCGUgaagcGCGAgUUCGacuCGGGCg -3' miRNA: 3'- -AGCuCG-GCGGCAa----CGCU-AAGU---GCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 106589 | 0.67 | 0.908565 |
Target: 5'- cUCGGcGCCGCCGUcaaGCGAacgaGCGcGACc -3' miRNA: 3'- -AGCU-CGGCGGCAa--CGCUaag-UGC-CUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 88485 | 0.67 | 0.875432 |
Target: 5'- aCGGuGCCGCCGgcGCGg--CGCGG-Cu -3' miRNA: 3'- aGCU-CGGCGGCaaCGCuaaGUGCCuG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 95081 | 0.67 | 0.908565 |
Target: 5'- uUCGAGgCGCUGcaGCGcucgugCGCGGGCc -3' miRNA: 3'- -AGCUCgGCGGCaaCGCuaa---GUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 78137 | 0.67 | 0.889361 |
Target: 5'- aCGuGCaCGaCCGggGCcuGAUUCGCGGAg -3' miRNA: 3'- aGCuCG-GC-GGCaaCG--CUAAGUGCCUg -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 38837 | 0.67 | 0.902393 |
Target: 5'- -gGAGgCGgCGgcgGCGAgggCGCGGGCg -3' miRNA: 3'- agCUCgGCgGCaa-CGCUaa-GUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 21549 | 0.67 | 0.882507 |
Target: 5'- gUCGGGCgCGCCGUgguccCGGcgCGCGGGg -3' miRNA: 3'- -AGCUCG-GCGGCAac---GCUaaGUGCCUg -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 58643 | 0.67 | 0.908565 |
Target: 5'- uUCGAcGCCGgCGgcGUGuucaaCGCGGACg -3' miRNA: 3'- -AGCU-CGGCgGCaaCGCuaa--GUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 8845 | 0.67 | 0.882507 |
Target: 5'- cCGcGCUGCUGgcGCGGcgaCACGGGCu -3' miRNA: 3'- aGCuCGGCGGCaaCGCUaa-GUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 36340 | 0.67 | 0.906738 |
Target: 5'- gCGGGCCucGgCGUucaagagcaauaccUGCGGUaCGCGGACu -3' miRNA: 3'- aGCUCGG--CgGCA--------------ACGCUAaGUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 51472 | 0.67 | 0.889361 |
Target: 5'- cUCGAGCgGCCGgguCGAUgcgCuCGGAUg -3' miRNA: 3'- -AGCUCGgCGGCaacGCUAa--GuGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 75501 | 0.66 | 0.925673 |
Target: 5'- aCGAGCCgcagGCCGUcucGCacggaGAUUCgaacGCGGACa -3' miRNA: 3'- aGCUCGG----CGGCAa--CG-----CUAAG----UGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 32740 | 0.66 | 0.925673 |
Target: 5'- uUCGGGUCGCgCGc-GCGAUUguugaacaucacCAUGGGCg -3' miRNA: 3'- -AGCUCGGCG-GCaaCGCUAA------------GUGCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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