Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7663 | 3' | -55.6 | NC_001973.1 | + | 123242 | 0.66 | 0.924058 |
Target: 5'- gCGucCCGCCGUUGCGucaacagaucgaccGUUCgGCGGuACa -3' miRNA: 3'- aGCucGGCGGCAACGC--------------UAAG-UGCC-UG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 75501 | 0.66 | 0.925673 |
Target: 5'- aCGAGCCgcagGCCGUcucGCacggaGAUUCgaacGCGGACa -3' miRNA: 3'- aGCUCGG----CGGCAa--CG-----CUAAG----UGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 32740 | 0.66 | 0.925673 |
Target: 5'- uUCGGGUCGCgCGc-GCGAUUguugaacaucacCAUGGGCg -3' miRNA: 3'- -AGCUCGGCG-GCaaCGCUAA------------GUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 132533 | 0.66 | 0.925673 |
Target: 5'- -aGAgGCCGCCGggcGCGGcg-GCGGGCu -3' miRNA: 3'- agCU-CGGCGGCaa-CGCUaagUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 103289 | 0.66 | 0.930903 |
Target: 5'- gCGAGUgGC---UGCcGUUCGCGGACg -3' miRNA: 3'- aGCUCGgCGgcaACGcUAAGUGCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 112816 | 0.66 | 0.930903 |
Target: 5'- cUCG-GCCGUCGUgUGCGugaUCAugaccCGGGCg -3' miRNA: 3'- -AGCuCGGCGGCA-ACGCua-AGU-----GCCUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 8019 | 0.66 | 0.930903 |
Target: 5'- aUCGGGCCGCgGccGCGA--CACGcACa -3' miRNA: 3'- -AGCUCGGCGgCaaCGCUaaGUGCcUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 18336 | 0.66 | 0.940654 |
Target: 5'- gUCGgauGGCCGCCGgccagcUUGCGugccAUUCGCGcGCa -3' miRNA: 3'- -AGC---UCGGCGGC------AACGC----UAAGUGCcUG- -5' |
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7663 | 3' | -55.6 | NC_001973.1 | + | 22735 | 0.66 | 0.940654 |
Target: 5'- gCGAGCCgcgGCCGUaucugUGCGAg--GgGGGCg -3' miRNA: 3'- aGCUCGG---CGGCA-----ACGCUaagUgCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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