miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7663 3' -55.6 NC_001973.1 + 95081 0.67 0.908565
Target:  5'- uUCGAGgCGCUGcaGCGcucgugCGCGGGCc -3'
miRNA:   3'- -AGCUCgGCGGCaaCGCuaa---GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 93746 0.73 0.616903
Target:  5'- gCGAGCCGCCcg-GCGAccaggaGCGGGCc -3'
miRNA:   3'- aGCUCGGCGGcaaCGCUaag---UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 88485 0.67 0.875432
Target:  5'- aCGGuGCCGCCGgcGCGg--CGCGG-Cu -3'
miRNA:   3'- aGCU-CGGCGGCaaCGCuaaGUGCCuG- -5'
7663 3' -55.6 NC_001973.1 + 81013 0.68 0.845037
Target:  5'- gUCGAGCacagcuugacCGCCGacgGCGGUaUGCGGGCc -3'
miRNA:   3'- -AGCUCG----------GCGGCaa-CGCUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 78137 0.67 0.889361
Target:  5'- aCGuGCaCGaCCGggGCcuGAUUCGCGGAg -3'
miRNA:   3'- aGCuCG-GC-GGCaaCG--CUAAGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 75501 0.66 0.925673
Target:  5'- aCGAGCCgcagGCCGUcucGCacggaGAUUCgaacGCGGACa -3'
miRNA:   3'- aGCUCGG----CGGCAa--CG-----CUAAG----UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 58643 0.67 0.908565
Target:  5'- uUCGAcGCCGgCGgcGUGuucaaCGCGGACg -3'
miRNA:   3'- -AGCU-CGGCgGCaaCGCuaa--GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 51472 0.67 0.889361
Target:  5'- cUCGAGCgGCCGgguCGAUgcgCuCGGAUg -3'
miRNA:   3'- -AGCUCGgCGGCaacGCUAa--GuGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 42977 0.69 0.820211
Target:  5'- gCGAgauGCUGCCGUUGCGGagUUUGCGuGCg -3'
miRNA:   3'- aGCU---CGGCGGCAACGCU--AAGUGCcUG- -5'
7663 3' -55.6 NC_001973.1 + 39416 0.68 0.852939
Target:  5'- gUCG-GCCGCgGUgagGCGcgUCGCguccaGGGCg -3'
miRNA:   3'- -AGCuCGGCGgCAa--CGCuaAGUG-----CCUG- -5'
7663 3' -55.6 NC_001973.1 + 38837 0.67 0.902393
Target:  5'- -gGAGgCGgCGgcgGCGAgggCGCGGGCg -3'
miRNA:   3'- agCUCgGCgGCaa-CGCUaa-GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 36340 0.67 0.906738
Target:  5'- gCGGGCCucGgCGUucaagagcaauaccUGCGGUaCGCGGACu -3'
miRNA:   3'- aGCUCGG--CgGCA--------------ACGCUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 35836 0.75 0.488022
Target:  5'- -gGGGCCGCUGUggGCGAUcCggACGGACa -3'
miRNA:   3'- agCUCGGCGGCAa-CGCUAaG--UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 33665 0.7 0.756753
Target:  5'- uUCGAGCCGCacguaGUUGCGcuuGUUCGucGACa -3'
miRNA:   3'- -AGCUCGGCGg----CAACGC---UAAGUgcCUG- -5'
7663 3' -55.6 NC_001973.1 + 32740 0.66 0.925673
Target:  5'- uUCGGGUCGCgCGc-GCGAUUguugaacaucacCAUGGGCg -3'
miRNA:   3'- -AGCUCGGCG-GCaaCGCUAA------------GUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 32566 0.78 0.348653
Target:  5'- cCGAcGCCGCCGUcggcucggcgcgcUGCGA--CACGGACg -3'
miRNA:   3'- aGCU-CGGCGGCA-------------ACGCUaaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 30362 0.79 0.298242
Target:  5'- uUCGGGCCGCCGgcgcgGCGAcUCggguGCGGGCc -3'
miRNA:   3'- -AGCUCGGCGGCaa---CGCUaAG----UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 29328 0.72 0.657615
Target:  5'- gUGAGCa--CGUUGUGAggCGCGGACa -3'
miRNA:   3'- aGCUCGgcgGCAACGCUaaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 22735 0.66 0.940654
Target:  5'- gCGAGCCgcgGCCGUaucugUGCGAg--GgGGGCg -3'
miRNA:   3'- aGCUCGG---CGGCA-----ACGCUaagUgCCUG- -5'
7663 3' -55.6 NC_001973.1 + 21549 0.67 0.882507
Target:  5'- gUCGGGCgCGCCGUgguccCGGcgCGCGGGg -3'
miRNA:   3'- -AGCUCG-GCGGCAac---GCUaaGUGCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.