miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7663 3' -55.6 NC_001973.1 + 88485 0.67 0.875432
Target:  5'- aCGGuGCCGCCGgcGCGg--CGCGG-Cu -3'
miRNA:   3'- aGCU-CGGCGGCaaCGCuaaGUGCCuG- -5'
7663 3' -55.6 NC_001973.1 + 125677 0.68 0.868143
Target:  5'- aCGuGCacgGCgGUUGCGGU-CACGGAa -3'
miRNA:   3'- aGCuCGg--CGgCAACGCUAaGUGCCUg -5'
7663 3' -55.6 NC_001973.1 + 118347 0.68 0.868143
Target:  5'- uUCGuGCgCGCCGUgaagcGCGAgUUCGacuCGGGCg -3'
miRNA:   3'- -AGCuCG-GCGGCAa----CGCU-AAGU---GCCUG- -5'
7663 3' -55.6 NC_001973.1 + 4654 0.68 0.868143
Target:  5'- gCGGG-CGCCGUcgGCGAgu--CGGACa -3'
miRNA:   3'- aGCUCgGCGGCAa-CGCUaaguGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 124856 0.68 0.867402
Target:  5'- -gGAGCCcuacgagGCCa-UGCGGgacgUCGCGGACg -3'
miRNA:   3'- agCUCGG-------CGGcaACGCUa---AGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 39416 0.68 0.852939
Target:  5'- gUCG-GCCGCgGUgagGCGcgUCGCguccaGGGCg -3'
miRNA:   3'- -AGCuCGGCGgCAa--CGCuaAGUG-----CCUG- -5'
7663 3' -55.6 NC_001973.1 + 109550 0.68 0.852158
Target:  5'- gCGAGCCGCgcgaacgccggcgCGggGCGggUUuCGGGCg -3'
miRNA:   3'- aGCUCGGCG-------------GCaaCGCuaAGuGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 81013 0.68 0.845037
Target:  5'- gUCGAGCacagcuugacCGCCGacgGCGGUaUGCGGGCc -3'
miRNA:   3'- -AGCUCG----------GCGGCaa-CGCUAaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 7400 0.68 0.844236
Target:  5'- cUCGAGgCGCCGaugUGCGuguaccuggucaaGUUCAaGGACu -3'
miRNA:   3'- -AGCUCgGCGGCa--ACGC-------------UAAGUgCCUG- -5'
7663 3' -55.6 NC_001973.1 + 42977 0.69 0.820211
Target:  5'- gCGAgauGCUGCCGUUGCGGagUUUGCGuGCg -3'
miRNA:   3'- aGCU---CGGCGGCAACGCU--AAGUGCcUG- -5'
7663 3' -55.6 NC_001973.1 + 109501 0.69 0.806335
Target:  5'- aCGAacgccgccGCCGCCGUucgccgcuuggcucuUGCGcUUUugGGGCg -3'
miRNA:   3'- aGCU--------CGGCGGCA---------------ACGCuAAGugCCUG- -5'
7663 3' -55.6 NC_001973.1 + 152375 0.69 0.793863
Target:  5'- gCGAGCCggacgGCCGgcGCGG---GCGGGCg -3'
miRNA:   3'- aGCUCGG-----CGGCaaCGCUaagUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 134992 0.69 0.793863
Target:  5'- cCGGGCCGUCGg-GCGGgagC-CGGGCa -3'
miRNA:   3'- aGCUCGGCGGCaaCGCUaa-GuGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 33665 0.7 0.756753
Target:  5'- uUCGAGCCGCacguaGUUGCGcuuGUUCGucGACa -3'
miRNA:   3'- -AGCUCGGCGg----CAACGC---UAAGUgcCUG- -5'
7663 3' -55.6 NC_001973.1 + 911 0.71 0.717899
Target:  5'- cUCGAGCCGCCGauucuUUGCGucguaaACGG-Cg -3'
miRNA:   3'- -AGCUCGGCGGC-----AACGCuaag--UGCCuG- -5'
7663 3' -55.6 NC_001973.1 + 103904 0.71 0.711957
Target:  5'- gCGAGCCGCCGcggcGCGAcgaggagcgcgucgUCGCGGcGCg -3'
miRNA:   3'- aGCUCGGCGGCaa--CGCUa-------------AGUGCC-UG- -5'
7663 3' -55.6 NC_001973.1 + 155106 0.71 0.707981
Target:  5'- --aAGCCGCCGUcGCuucuaUCACGGGCg -3'
miRNA:   3'- agcUCGGCGGCAaCGcua--AGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 146013 0.72 0.667763
Target:  5'- gCGGGuCCGCCGgcucgagcGCGggUCgACGGACg -3'
miRNA:   3'- aGCUC-GGCGGCaa------CGCuaAG-UGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 29328 0.72 0.657615
Target:  5'- gUGAGCa--CGUUGUGAggCGCGGACa -3'
miRNA:   3'- aGCUCGgcgGCAACGCUaaGUGCCUG- -5'
7663 3' -55.6 NC_001973.1 + 17469 0.72 0.64643
Target:  5'- cUCGAGCaUGCCGUgcgccGCGAggucggcuucuauUUCGCGGAa -3'
miRNA:   3'- -AGCUCG-GCGGCAa----CGCU-------------AAGUGCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.