miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7663 5' -61.4 NC_001973.1 + 81185 0.66 0.686656
Target:  5'- -gGUCgGCGGcggcgaCGGUGUUGGUcagcGCCAa -3'
miRNA:   3'- gaCAGgCGCCug----GCCACGACCG----UGGU- -5'
7663 5' -61.4 NC_001973.1 + 139895 0.66 0.667112
Target:  5'- -cGagCGCGuGGugUCGGUGCUGcGCGCCAu -3'
miRNA:   3'- gaCagGCGC-CU--GGCCACGAC-CGUGGU- -5'
7663 5' -61.4 NC_001973.1 + 122616 0.66 0.657297
Target:  5'- -cGUCgGCGGcGCCGacGCgGGCGCCGg -3'
miRNA:   3'- gaCAGgCGCC-UGGCcaCGaCCGUGGU- -5'
7663 5' -61.4 NC_001973.1 + 137773 0.67 0.637618
Target:  5'- --aUCCGCGGcCagcaGGUGg-GGCACCAu -3'
miRNA:   3'- gacAGGCGCCuGg---CCACgaCCGUGGU- -5'
7663 5' -61.4 NC_001973.1 + 96879 0.67 0.637618
Target:  5'- gUGgCCGCGGAUCuGUGCgcggcgGGCGCg- -3'
miRNA:   3'- gACaGGCGCCUGGcCACGa-----CCGUGgu -5'
7663 5' -61.4 NC_001973.1 + 46156 0.67 0.617923
Target:  5'- cCUGUgCUGggaCGGACUGGUGUUcGCGCCGc -3'
miRNA:   3'- -GACA-GGC---GCCUGGCCACGAcCGUGGU- -5'
7663 5' -61.4 NC_001973.1 + 51925 0.67 0.598268
Target:  5'- gCUGgacagCCGCGGAggacUCGGUcuaGCUGGacaGCCAc -3'
miRNA:   3'- -GACa----GGCGCCU----GGCCA---CGACCg--UGGU- -5'
7663 5' -61.4 NC_001973.1 + 64867 0.67 0.598268
Target:  5'- -cGUCCcuGCGGGCuCGcgcccgaaGUGCUGGCGCgGg -3'
miRNA:   3'- gaCAGG--CGCCUG-GC--------CACGACCGUGgU- -5'
7663 5' -61.4 NC_001973.1 + 78614 0.68 0.578704
Target:  5'- -aGUCCGCGGACgacgaGGccGCgGGCGCUc -3'
miRNA:   3'- gaCAGGCGCCUGg----CCa-CGaCCGUGGu -5'
7663 5' -61.4 NC_001973.1 + 43591 0.69 0.530513
Target:  5'- -aGUCCaGCGGGuuGGgcguguuguagUGCuUGGCGCCGa -3'
miRNA:   3'- gaCAGG-CGCCUggCC-----------ACG-ACCGUGGU- -5'
7663 5' -61.4 NC_001973.1 + 92784 0.69 0.496735
Target:  5'- aUGUCCGCGGACgaggacgaguccaagUucGGUGCUGGgGCg- -3'
miRNA:   3'- gACAGGCGCCUG---------------G--CCACGACCgUGgu -5'
7663 5' -61.4 NC_001973.1 + 52851 0.71 0.396298
Target:  5'- -cGgCCGCGcgcGGCCGGUcgguccaGCUGGCGCCGc -3'
miRNA:   3'- gaCaGGCGC---CUGGCCA-------CGACCGUGGU- -5'
7663 5' -61.4 NC_001973.1 + 111272 0.73 0.31335
Target:  5'- gCUGcCCGUGGGCaacucggUGGUGgUGGCGCCGc -3'
miRNA:   3'- -GACaGGCGCCUG-------GCCACgACCGUGGU- -5'
7663 5' -61.4 NC_001973.1 + 139853 1.07 0.001257
Target:  5'- cCUGUCCGCGGACCGGUGCUGGCACCAc -3'
miRNA:   3'- -GACAGGCGCCUGGCCACGACCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.