miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7664 3' -56.5 NC_001973.1 + 133749 0.66 0.899234
Target:  5'- gCGUCACGUUgaaCGCGGGCAcGUCg- -3'
miRNA:   3'- -GUAGUGCAGaagGCGCCUGUcCGGac -5'
7664 3' -56.5 NC_001973.1 + 46484 0.67 0.841167
Target:  5'- cCGUCGcCGUCgccCgCGCGGAC-GGCCUc -3'
miRNA:   3'- -GUAGU-GCAGaa-G-GCGCCUGuCCGGAc -5'
7664 3' -56.5 NC_001973.1 + 5719 0.68 0.824657
Target:  5'- --gCGCGUCgccCCGCuggguggugaccGGACGGGCCg- -3'
miRNA:   3'- guaGUGCAGaa-GGCG------------CCUGUCCGGac -5'
7664 3' -56.5 NC_001973.1 + 39412 0.68 0.816138
Target:  5'- --cCAgGUCggCCGCGGugAGGCg-- -3'
miRNA:   3'- guaGUgCAGaaGGCGCCugUCCGgac -5'
7664 3' -56.5 NC_001973.1 + 35964 0.68 0.816138
Target:  5'- gCAUCACGccuuUCUguucgCCGCGGACgAGGUgaGc -3'
miRNA:   3'- -GUAGUGC----AGAa----GGCGCCUG-UCCGgaC- -5'
7664 3' -56.5 NC_001973.1 + 35128 0.68 0.807455
Target:  5'- gUAUCACGcC-UCCGCcggcGACAGGCCc- -3'
miRNA:   3'- -GUAGUGCaGaAGGCGc---CUGUCCGGac -5'
7664 3' -56.5 NC_001973.1 + 113214 0.68 0.789627
Target:  5'- --aCGCGUCcgCCGCGuaGACGGGCUUc -3'
miRNA:   3'- guaGUGCAGaaGGCGC--CUGUCCGGAc -5'
7664 3' -56.5 NC_001973.1 + 33335 0.69 0.761859
Target:  5'- gGUCACGUUgcggCCGCGGAUGaugcccgugccGGCCg- -3'
miRNA:   3'- gUAGUGCAGaa--GGCGCCUGU-----------CCGGac -5'
7664 3' -56.5 NC_001973.1 + 123250 0.69 0.7418
Target:  5'- cCGUUGCGUCaacagaucgaccgUUCgGCGGuACAGGCCg- -3'
miRNA:   3'- -GUAGUGCAG-------------AAGgCGCC-UGUCCGGac -5'
7664 3' -56.5 NC_001973.1 + 93587 0.7 0.682477
Target:  5'- gGUCGCGUagugCCcgcgcugGCGGACAGGCCc- -3'
miRNA:   3'- gUAGUGCAgaa-GG-------CGCCUGUCCGGac -5'
7664 3' -56.5 NC_001973.1 + 138690 1.07 0.003669
Target:  5'- cCAUCACGUCUUCCGCGGACAGGCCUGc -3'
miRNA:   3'- -GUAGUGCAGAAGGCGCCUGUCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.