miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7665 3' -52.6 NC_001973.1 + 1009 0.66 0.983646
Target:  5'- gUCGU------UUUCGGgCGGCGCGUCg -3'
miRNA:   3'- -AGCAuaaacuGAAGCCgGUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 4909 0.66 0.983646
Target:  5'- uUCGUuaucgUGACggaaacgUCGGCgGGCucguCGCCg -3'
miRNA:   3'- -AGCAuaa--ACUGa------AGCCGgUCGc---GCGG- -5'
7665 3' -52.6 NC_001973.1 + 5874 0.69 0.932251
Target:  5'- cUCGaga--GGCUggugCGGCgCAGCGCGCg -3'
miRNA:   3'- -AGCauaaaCUGAa---GCCG-GUCGCGCGg -5'
7665 3' -52.6 NC_001973.1 + 6105 0.67 0.974615
Target:  5'- aCGUGcgcaUGACggCGcGCgAGgGCGCCg -3'
miRNA:   3'- aGCAUaa--ACUGaaGC-CGgUCgCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 6399 0.69 0.908427
Target:  5'- aCGU-UUUGAUggccgagugcgCGGCggCGGCGCGCCg -3'
miRNA:   3'- aGCAuAAACUGaa---------GCCG--GUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 7261 0.67 0.968935
Target:  5'- gCGcagcgGGC-UCGGCgcgCGGCGCGCCc -3'
miRNA:   3'- aGCauaaaCUGaAGCCG---GUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 9433 0.67 0.974615
Target:  5'- cUCGUAac-GAaggCGGCCGGCGCcucCCa -3'
miRNA:   3'- -AGCAUaaaCUgaaGCCGGUCGCGc--GG- -5'
7665 3' -52.6 NC_001973.1 + 14550 0.72 0.828254
Target:  5'- uUCGUuc--GACggcCGGCCGGCGCaCCa -3'
miRNA:   3'- -AGCAuaaaCUGaa-GCCGGUCGCGcGG- -5'
7665 3' -52.6 NC_001973.1 + 16067 0.71 0.853046
Target:  5'- gUCGUGUUUcGAUcgcgUCuGUCGGCGCGCUc -3'
miRNA:   3'- -AGCAUAAA-CUGa---AGcCGGUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 16183 0.67 0.971878
Target:  5'- cCGUGUc-GGCgcaGGCCgcuagAGCGCGCUg -3'
miRNA:   3'- aGCAUAaaCUGaagCCGG-----UCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 18336 0.68 0.958805
Target:  5'- gUCGga--UGGCcgcCGGCCAgcuuGCGUGCCa -3'
miRNA:   3'- -AGCauaaACUGaa-GCCGGU----CGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 19680 0.68 0.945722
Target:  5'- uUCGaaaucgcGCcUCGGCCGGCGCGUa -3'
miRNA:   3'- -AGCauaaac-UGaAGCCGGUCGCGCGg -5'
7665 3' -52.6 NC_001973.1 + 21466 0.68 0.958805
Target:  5'- cCGUccGUcaGGCUcaccUCGGUgAGCGCGUCg -3'
miRNA:   3'- aGCA--UAaaCUGA----AGCCGgUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 21532 0.74 0.714922
Target:  5'- aCGUGccUGAUcUCGGCgucgGGCGCGCCg -3'
miRNA:   3'- aGCAUaaACUGaAGCCGg---UCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 23083 0.69 0.90966
Target:  5'- ------aUGGCgcugcgcUCGGCCgaagAGCGCGCCg -3'
miRNA:   3'- agcauaaACUGa------AGCCGG----UCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 24160 0.66 0.977152
Target:  5'- cUCGgcgcUGGCgcugccgcugCGGCCgcGGCGCGUCa -3'
miRNA:   3'- -AGCauaaACUGaa--------GCCGG--UCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 28382 0.68 0.958805
Target:  5'- uUCGacuUAUUc--CUUCGcGCCGGCGaCGCCg -3'
miRNA:   3'- -AGC---AUAAacuGAAGC-CGGUCGC-GCGG- -5'
7665 3' -52.6 NC_001973.1 + 31965 0.68 0.946611
Target:  5'- aCGUAgcgcACcUCGGgCuGCGCGCCg -3'
miRNA:   3'- aGCAUaaacUGaAGCCgGuCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 32567 0.69 0.937282
Target:  5'- -------cGACgccgccgUCGGCuCGGCGCGCUg -3'
miRNA:   3'- agcauaaaCUGa------AGCCG-GUCGCGCGG- -5'
7665 3' -52.6 NC_001973.1 + 34679 0.69 0.937282
Target:  5'- aUCGUGUccgugcucUUGAacgCGGUC-GCGUGCCa -3'
miRNA:   3'- -AGCAUA--------AACUgaaGCCGGuCGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.