miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7665 5' -56.6 NC_001973.1 + 138601 1.06 0.004066
Target:  5'- cUUGACGAGCACCGACGCCAAGCGUCUg -3'
miRNA:   3'- -AACUGCUCGUGGCUGCGGUUCGCAGA- -5'
7665 5' -56.6 NC_001973.1 + 44545 0.78 0.270544
Target:  5'- -cGACGAGCGCCGGCGCUgcaauuuauAGGCGcCg -3'
miRNA:   3'- aaCUGCUCGUGGCUGCGG---------UUCGCaGa -5'
7665 5' -56.6 NC_001973.1 + 79628 0.76 0.364449
Target:  5'- gUUGACGGGCGUCGuCGCCGGGuCGUCg -3'
miRNA:   3'- -AACUGCUCGUGGCuGCGGUUC-GCAGa -5'
7665 5' -56.6 NC_001973.1 + 5852 0.76 0.364449
Target:  5'- -cGGCGAGCGCaCG-CGCCG-GCGUCUc -3'
miRNA:   3'- aaCUGCUCGUG-GCuGCGGUuCGCAGA- -5'
7665 5' -56.6 NC_001973.1 + 136729 0.75 0.389091
Target:  5'- -cGAaagGAGCGCgCGAUGUCGAGCGUCUc -3'
miRNA:   3'- aaCUg--CUCGUG-GCUGCGGUUCGCAGA- -5'
7665 5' -56.6 NC_001973.1 + 122619 0.75 0.397544
Target:  5'- -cGGCG-GCGCCGACGCgGgcgccGGCGUCg -3'
miRNA:   3'- aaCUGCuCGUGGCUGCGgU-----UCGCAGa -5'
7665 5' -56.6 NC_001973.1 + 17110 0.75 0.406114
Target:  5'- aUGGCgucccagcgGAGCGCgGGCGCCAcGCGUCUc -3'
miRNA:   3'- aACUG---------CUCGUGgCUGCGGUuCGCAGA- -5'
7665 5' -56.6 NC_001973.1 + 109866 0.73 0.488131
Target:  5'- -cGACGAGgACgCGGCGCgcGGCGUCUa -3'
miRNA:   3'- aaCUGCUCgUG-GCUGCGguUCGCAGA- -5'
7665 5' -56.6 NC_001973.1 + 56515 0.73 0.507416
Target:  5'- -gGGCGGGC-UCGGCGCCAAGC-UCg -3'
miRNA:   3'- aaCUGCUCGuGGCUGCGGUUCGcAGa -5'
7665 5' -56.6 NC_001973.1 + 56461 0.73 0.507416
Target:  5'- -gGGCGGGC-UCGGCGCCAAGC-UCg -3'
miRNA:   3'- aaCUGCUCGuGGCUGCGGUUCGcAGa -5'
7665 5' -56.6 NC_001973.1 + 56488 0.73 0.507416
Target:  5'- -gGGCGGGC-UCGGCGCCAAGC-UCg -3'
miRNA:   3'- aaCUGCUCGuGGCUGCGGUUCGcAGa -5'
7665 5' -56.6 NC_001973.1 + 56542 0.72 0.536924
Target:  5'- -gGGCGGGC-UCGGCGCCGAGC-UCg -3'
miRNA:   3'- aaCUGCUCGuGGCUGCGGUUCGcAGa -5'
7665 5' -56.6 NC_001973.1 + 104268 0.72 0.546895
Target:  5'- -cGGCG-GCGCCGcCGCCGGGCugGUCg -3'
miRNA:   3'- aaCUGCuCGUGGCuGCGGUUCG--CAGa -5'
7665 5' -56.6 NC_001973.1 + 43005 0.72 0.567005
Target:  5'- --uGCGAGCGCCGAcuCGCC--GCGUCg -3'
miRNA:   3'- aacUGCUCGUGGCU--GCGGuuCGCAGa -5'
7665 5' -56.6 NC_001973.1 + 22975 0.71 0.587297
Target:  5'- -cGGCGGcGCGCCGACGCCGA-CGcCg -3'
miRNA:   3'- aaCUGCU-CGUGGCUGCGGUUcGCaGa -5'
7665 5' -56.6 NC_001973.1 + 105473 0.71 0.607721
Target:  5'- -cGGCGGGCACaugauGugGCCGGGCG-Cg -3'
miRNA:   3'- aaCUGCUCGUGg----CugCGGUUCGCaGa -5'
7665 5' -56.6 NC_001973.1 + 53585 0.71 0.628217
Target:  5'- -aGGCGcGCGCCGGCGCCGAGg---- -3'
miRNA:   3'- aaCUGCuCGUGGCUGCGGUUCgcaga -5'
7665 5' -56.6 NC_001973.1 + 62917 0.71 0.628217
Target:  5'- -aGcACGAGCGCCGAUucgacucggGCCG-GCGUCg -3'
miRNA:   3'- aaC-UGCUCGUGGCUG---------CGGUuCGCAGa -5'
7665 5' -56.6 NC_001973.1 + 6434 0.71 0.638474
Target:  5'- -cGACGAGCGcgcCCGuCGCCGGagccgugcucgcGCGUCUa -3'
miRNA:   3'- aaCUGCUCGU---GGCuGCGGUU------------CGCAGA- -5'
7665 5' -56.6 NC_001973.1 + 123008 0.7 0.648725
Target:  5'- -aGcAUGAGCGCCucgaagGGCGCCGccAGCGUCg -3'
miRNA:   3'- aaC-UGCUCGUGG------CUGCGGU--UCGCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.