Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7666 | 5' | -49.8 | NC_001973.1 | + | 138497 | 1.13 | 0.006937 |
Target: 5'- aCCGGCUUCAAGGUGCGCGAAAAGAACu -3' miRNA: 3'- -GGCCGAAGUUCCACGCGCUUUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 136705 | 0.79 | 0.581113 |
Target: 5'- -gGGCgccuuuugggCGAGGaUGCGCGAAAGGAGCg -3' miRNA: 3'- ggCCGaa--------GUUCC-ACGCGCUUUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 120782 | 0.77 | 0.728644 |
Target: 5'- aCCGGCUUCGAGGgcgugcGCGCGcuGcuGACg -3' miRNA: 3'- -GGCCGAAGUUCCa-----CGCGCuuUucUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 104601 | 0.74 | 0.842019 |
Target: 5'- -gGGCUUCGucggcGGcGCGCGAAAAGAcgACg -3' miRNA: 3'- ggCCGAAGUu----CCaCGCGCUUUUCU--UG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 38844 | 0.73 | 0.881434 |
Target: 5'- gCGGCggCGAGG-GCGCGGGc-GAACa -3' miRNA: 3'- gGCCGaaGUUCCaCGCGCUUuuCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 78423 | 0.73 | 0.888623 |
Target: 5'- aCGGCUguUCGAGGaggccgGCGUGGAGAuGGACc -3' miRNA: 3'- gGCCGA--AGUUCCa-----CGCGCUUUU-CUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 91472 | 0.72 | 0.920833 |
Target: 5'- aCGGgaUUggGGcaccGCGCGAGAAGAAa -3' miRNA: 3'- gGCCgaAGuuCCa---CGCGCUUUUCUUg -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 60083 | 0.71 | 0.937087 |
Target: 5'- aCCGaGUUUC-AGGUGCGCGAcguGGuGGCg -3' miRNA: 3'- -GGC-CGAAGuUCCACGCGCUuu-UC-UUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 99083 | 0.71 | 0.94199 |
Target: 5'- gUCGGUUUCGAGGUGUccGCGAAc----- -3' miRNA: 3'- -GGCCGAAGUUCCACG--CGCUUuucuug -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 93858 | 0.71 | 0.955181 |
Target: 5'- gUGGCUg-AAGGUGCGCau--GGAGCa -3' miRNA: 3'- gGCCGAagUUCCACGCGcuuuUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 95016 | 0.7 | 0.969371 |
Target: 5'- aCGGCUUCGugccGaUGUGCGGcgGGGACg -3' miRNA: 3'- gGCCGAAGUu---CcACGCGCUuuUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 58776 | 0.7 | 0.969371 |
Target: 5'- gCCGGCgcgCcguggugaaccuGAGcGUGCGCGAGcuGGAGCu -3' miRNA: 3'- -GGCCGaa-G------------UUC-CACGCGCUUu-UCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 14618 | 0.7 | 0.969371 |
Target: 5'- cCCGGCUguc-GGUGCGCGAc------ -3' miRNA: 3'- -GGCCGAaguuCCACGCGCUuuucuug -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 118497 | 0.7 | 0.972348 |
Target: 5'- gCGGCgacUCGccAGGcccUGCGCGAAAucGGGACc -3' miRNA: 3'- gGCCGa--AGU--UCC---ACGCGCUUU--UCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 132848 | 0.69 | 0.981981 |
Target: 5'- gCCGGCcaggAAGGaGCGCGAcauguccucgggaAAGGAGCg -3' miRNA: 3'- -GGCCGaag-UUCCaCGCGCU-------------UUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 45448 | 0.69 | 0.984174 |
Target: 5'- gUCGGgUugUCGcacAGGUGCGCGcAAucGAACg -3' miRNA: 3'- -GGCCgA--AGU---UCCACGCGC-UUuuCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 108257 | 0.68 | 0.987636 |
Target: 5'- aCGGCUgcc-GGcGCGCGGAGAcGGACc -3' miRNA: 3'- gGCCGAaguuCCaCGCGCUUUU-CUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 52933 | 0.68 | 0.987636 |
Target: 5'- uCgGGCggaAAGGUGUacGCGuGAAAGAGCg -3' miRNA: 3'- -GgCCGaagUUCCACG--CGC-UUUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 135854 | 0.68 | 0.990481 |
Target: 5'- uCUGGag-CGAGGUGUGCGucGGGuGCg -3' miRNA: 3'- -GGCCgaaGUUCCACGCGCuuUUCuUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 52785 | 0.68 | 0.991696 |
Target: 5'- gCCGGCcgUCGAGacucUGCGCGGc--GAACu -3' miRNA: 3'- -GGCCGa-AGUUCc---ACGCGCUuuuCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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