miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7667 3' -61.8 NC_001973.1 + 133283 0.68 0.585008
Target:  5'- cGCGGCCGAgaacGCG-GCCGGc-GGCGGc -3'
miRNA:   3'- cCGCCGGCU----CGCaCGGCUucCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 28294 0.68 0.575378
Target:  5'- uGGCGGCCGAGC--GCCGcgucGGcGCAa- -3'
miRNA:   3'- -CCGCCGGCUCGcaCGGCuu--CC-CGUcc -5'
7667 3' -61.8 NC_001973.1 + 146365 0.68 0.575378
Target:  5'- --gGGCUccagacacauGAGCGUGugcCCGgcGGGCAGGu -3'
miRNA:   3'- ccgCCGG----------CUCGCAC---GGCuuCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 137254 0.68 0.565785
Target:  5'- gGGCuuucgaGCCGAGUGUGCgGc--GGCGGGg -3'
miRNA:   3'- -CCGc-----CGGCUCGCACGgCuucCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 53858 0.68 0.556233
Target:  5'- cGGCGGCgGcGGCGccGCCGAGcGcGGCGGc -3'
miRNA:   3'- -CCGCCGgC-UCGCa-CGGCUU-C-CCGUCc -5'
7667 3' -61.8 NC_001973.1 + 67627 0.68 0.556233
Target:  5'- -cCGGCCgcguccgaGAGCGUGCCGAGGaacacGCAGu -3'
miRNA:   3'- ccGCCGG--------CUCGCACGGCUUCc----CGUCc -5'
7667 3' -61.8 NC_001973.1 + 158689 0.68 0.550524
Target:  5'- cGGCGGCCGAGCGcgcgccUaccgacgcccuguucGCCGAGaucaGGCgAGGa -3'
miRNA:   3'- -CCGCCGGCUCGC------A---------------CGGCUUc---CCG-UCC- -5'
7667 3' -61.8 NC_001973.1 + 123001 0.68 0.546729
Target:  5'- cGCGGCCagcauGAGCGccUCGAAGGGCGc- -3'
miRNA:   3'- cCGCCGG-----CUCGCacGGCUUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 93849 0.68 0.546729
Target:  5'- cGUGGCCGuGUG-GCUGAAGGuGCGcauGGa -3'
miRNA:   3'- cCGCCGGCuCGCaCGGCUUCC-CGU---CC- -5'
7667 3' -61.8 NC_001973.1 + 75583 0.68 0.546729
Target:  5'- aGCGGaCgGAGCGgGCgGAGcGGGCGGa -3'
miRNA:   3'- cCGCC-GgCUCGCaCGgCUU-CCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 29208 0.68 0.546729
Target:  5'- uGGauGCCGuucGCGaUGuuGgcGGGCAGGc -3'
miRNA:   3'- -CCgcCGGCu--CGC-ACggCuuCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 10712 0.69 0.537276
Target:  5'- gGGCGGCUcgauGAGCGgcaccgucgaguUGUCGAAGcgcaucagcGGCGGGu -3'
miRNA:   3'- -CCGCCGG----CUCGC------------ACGGCUUC---------CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 104265 0.69 0.527881
Target:  5'- cGGCGGC--GGCGccGCCGccGGGCuGGu -3'
miRNA:   3'- -CCGCCGgcUCGCa-CGGCuuCCCGuCC- -5'
7667 3' -61.8 NC_001973.1 + 124703 0.69 0.527881
Target:  5'- cGGUGGCCGAGC-UGUac---GGCAGGu -3'
miRNA:   3'- -CCGCCGGCUCGcACGgcuucCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 152381 0.69 0.518548
Target:  5'- cGGaCGGCCGGcGCGgGCgGGcgcGGGGCGGc -3'
miRNA:   3'- -CC-GCCGGCU-CGCaCGgCU---UCCCGUCc -5'
7667 3' -61.8 NC_001973.1 + 134976 0.69 0.509281
Target:  5'- cGGCGaUCGAGUacguccggGCCGucGGGCGGGa -3'
miRNA:   3'- -CCGCcGGCUCGca------CGGCuuCCCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 132430 0.69 0.500084
Target:  5'- aGCGaGgCGAGCGUGgUGGAGgcgccGGCGGGg -3'
miRNA:   3'- cCGC-CgGCUCGCACgGCUUC-----CCGUCC- -5'
7667 3' -61.8 NC_001973.1 + 103938 0.7 0.472953
Target:  5'- cGCGGCgCgGGGCGUGCCGucGcGGCGc- -3'
miRNA:   3'- cCGCCG-G-CUCGCACGGCuuC-CCGUcc -5'
7667 3' -61.8 NC_001973.1 + 95145 0.71 0.421054
Target:  5'- gGGCGGCCGuGCagaaGCCGcaaAAGGGCGu- -3'
miRNA:   3'- -CCGCCGGCuCGca--CGGC---UUCCCGUcc -5'
7667 3' -61.8 NC_001973.1 + 146070 0.71 0.388424
Target:  5'- cGGC-GCCGAGcCG-GCuCGGGcGGGCGGGg -3'
miRNA:   3'- -CCGcCGGCUC-GCaCG-GCUU-CCCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.