miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7668 5' -56.3 NC_001973.1 + 133283 0.68 0.824262
Target:  5'- --cGCGGCCgagaaCGcgGCCGgcGgcGGCGCc -3'
miRNA:   3'- caaCGCCGG-----GCa-CGGCauUauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 55956 0.68 0.832652
Target:  5'- ----gGGCCCGUucuGUCGggagAGGCGCg -3'
miRNA:   3'- caacgCCGGGCA---CGGCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 7844 0.67 0.840859
Target:  5'- --gGCGGCgCCGcGcCCGUcGAgcuGGCGCg -3'
miRNA:   3'- caaCGCCG-GGCaC-GGCA-UUau-CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 44681 0.67 0.840859
Target:  5'- --gGCGGCUCGUggagGCCGgUGAUcgagaugggaaAGGUGCc -3'
miRNA:   3'- caaCGCCGGGCA----CGGC-AUUA-----------UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 106416 0.67 0.848878
Target:  5'- -gUGCGGCgCGacGCCGagcgcGGCGCa -3'
miRNA:   3'- caACGCCGgGCa-CGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 40496 0.67 0.848878
Target:  5'- --aGCGGCCUGaucaCCGUGAc-GGCGUg -3'
miRNA:   3'- caaCGCCGGGCac--GGCAUUauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 87979 0.67 0.848878
Target:  5'- --gGuCGGCCCGUcggucgcguuGCCGUuuuuGGCGUu -3'
miRNA:   3'- caaC-GCCGGGCA----------CGGCAuuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 25718 0.67 0.856702
Target:  5'- cUUGCGcgccGCCCGcGCCGcc---GGCGCg -3'
miRNA:   3'- cAACGC----CGGGCaCGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 45989 0.67 0.856702
Target:  5'- -cUGUcGCUgGUGCCGcGAUGccGGCGCg -3'
miRNA:   3'- caACGcCGGgCACGGCaUUAU--CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 94404 0.67 0.856702
Target:  5'- --cGCGGCCCGcggcGCCGcccgGAccGGCGg -3'
miRNA:   3'- caaCGCCGGGCa---CGGCa---UUauCCGCg -5'
7668 5' -56.3 NC_001973.1 + 16178 0.67 0.864324
Target:  5'- --gGC-GCCCGUGUCGgcGcAGGcCGCu -3'
miRNA:   3'- caaCGcCGGGCACGGCauUaUCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 69401 0.67 0.871737
Target:  5'- --aGaCGGCgCCGUGUCGg---AGGaCGCa -3'
miRNA:   3'- caaC-GCCG-GGCACGGCauuaUCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 64030 0.67 0.871737
Target:  5'- -cUGCGgcGCCCGgaaGCUGUucgucAAcGGGCGCa -3'
miRNA:   3'- caACGC--CGGGCa--CGGCA-----UUaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 74073 0.66 0.885918
Target:  5'- --aGCGcGCCCGUGUCGUAcuucaAGGUu- -3'
miRNA:   3'- caaCGC-CGGGCACGGCAUua---UCCGcg -5'
7668 5' -56.3 NC_001973.1 + 138360 0.66 0.885918
Target:  5'- --gGCGGCCgagCGUGCCGaa--GGGCa- -3'
miRNA:   3'- caaCGCCGG---GCACGGCauuaUCCGcg -5'
7668 5' -56.3 NC_001973.1 + 61316 0.66 0.892677
Target:  5'- --gGCGGCCuCGUcGCCGgc----GCGCa -3'
miRNA:   3'- caaCGCCGG-GCA-CGGCauuaucCGCG- -5'
7668 5' -56.3 NC_001973.1 + 145012 0.66 0.892677
Target:  5'- --gGCGGCuCCGgcggcGCCcgAGUGcGGCGCg -3'
miRNA:   3'- caaCGCCG-GGCa----CGGcaUUAU-CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 95688 0.66 0.895317
Target:  5'- --gGCGGCCCGacgagcccuacaccGCCGac---GGCGCg -3'
miRNA:   3'- caaCGCCGGGCa-------------CGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 13334 0.66 0.898565
Target:  5'- --gGCGGacgagcgcaagcaCCCgGUGCUGUGcguGGCGCg -3'
miRNA:   3'- caaCGCC-------------GGG-CACGGCAUuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 33340 0.66 0.899208
Target:  5'- cGUUGCGGCCgCGgaugaUGCCcGUGcc-GGcCGCg -3'
miRNA:   3'- -CAACGCCGG-GC-----ACGG-CAUuauCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.