miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7668 5' -56.3 NC_001973.1 + 6210 0.71 0.6213
Target:  5'- --gGCGGCgCgGUGCCGgcgc-GGCGCc -3'
miRNA:   3'- caaCGCCG-GgCACGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 6403 0.66 0.911576
Target:  5'- uUUGaUGGCCgaGUGCgCGgcGgcGGCGCg -3'
miRNA:   3'- cAAC-GCCGGg-CACG-GCauUauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 6439 0.66 0.91098
Target:  5'- --aGCGcGCCCGUcgccggaGCCGUGcuc-GCGCg -3'
miRNA:   3'- caaCGC-CGGGCA-------CGGCAUuaucCGCG- -5'
7668 5' -56.3 NC_001973.1 + 7844 0.67 0.840859
Target:  5'- --gGCGGCgCCGcGcCCGUcGAgcuGGCGCg -3'
miRNA:   3'- caaCGCCG-GGCaC-GGCA-UUau-CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 10051 0.69 0.761137
Target:  5'- --gGUGGCgCaCGUGCCGc---AGGCGCc -3'
miRNA:   3'- caaCGCCG-G-GCACGGCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 10473 0.68 0.798085
Target:  5'- --aGCcacacGCCCGUGCUGggGUugcacgagcGGGCGCg -3'
miRNA:   3'- caaCGc----CGGGCACGGCauUA---------UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 13334 0.66 0.898565
Target:  5'- --gGCGGacgagcgcaagcaCCCgGUGCUGUGcguGGCGCg -3'
miRNA:   3'- caaCGCC-------------GGG-CACGGCAUuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 16178 0.67 0.864324
Target:  5'- --gGC-GCCCGUGUCGgcGcAGGcCGCu -3'
miRNA:   3'- caaCGcCGGGCACGGCauUaUCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 18539 0.66 0.905509
Target:  5'- --cGgGGCgCGccgGCCGc-AUAGGCGCc -3'
miRNA:   3'- caaCgCCGgGCa--CGGCauUAUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 22341 0.69 0.779874
Target:  5'- -gUGgGGUCCGUGgUGcUGAUAgcGGCGCu -3'
miRNA:   3'- caACgCCGGGCACgGC-AUUAU--CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 25718 0.67 0.856702
Target:  5'- cUUGCGcgccGCCCGcGCCGcc---GGCGCg -3'
miRNA:   3'- cAACGC----CGGGCaCGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 27840 0.77 0.336938
Target:  5'- cUUGCGGCCCGguugGCCGgcgcuGGCGg -3'
miRNA:   3'- cAACGCCGGGCa---CGGCauuauCCGCg -5'
7668 5' -56.3 NC_001973.1 + 29955 0.66 0.911576
Target:  5'- ---uCGaGCCCGUacagagacGCCGgcucggUGGUGGGCGCg -3'
miRNA:   3'- caacGC-CGGGCA--------CGGC------AUUAUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 33340 0.66 0.899208
Target:  5'- cGUUGCGGCCgCGgaugaUGCCcGUGcc-GGcCGCg -3'
miRNA:   3'- -CAACGCCGG-GC-----ACGG-CAUuauCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 40496 0.67 0.848878
Target:  5'- --aGCGGCCUGaucaCCGUGAc-GGCGUg -3'
miRNA:   3'- caaCGCCGGGCac--GGCAUUauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 44681 0.67 0.840859
Target:  5'- --gGCGGCUCGUggagGCCGgUGAUcgagaugggaaAGGUGCc -3'
miRNA:   3'- caaCGCCGGGCA----CGGC-AUUA-----------UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 45989 0.67 0.856702
Target:  5'- -cUGUcGCUgGUGCCGcGAUGccGGCGCg -3'
miRNA:   3'- caACGcCGGgCACGGCaUUAU--CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 47692 0.7 0.702489
Target:  5'- -aUGCGGCCguaCGUGCCGggcggcAGGCa- -3'
miRNA:   3'- caACGCCGG---GCACGGCauua--UCCGcg -5'
7668 5' -56.3 NC_001973.1 + 55956 0.68 0.832652
Target:  5'- ----gGGCCCGUucuGUCGggagAGGCGCg -3'
miRNA:   3'- caacgCCGGGCA---CGGCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 61316 0.66 0.892677
Target:  5'- --gGCGGCCuCGUcGCCGgc----GCGCa -3'
miRNA:   3'- caaCGCCGG-GCA-CGGCauuaucCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.